1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctggataatgccggggattgttgagaagctgaaatgatttctgtggggcttctattgcgtgtgcaaagcgtacttgatcagccttgttgattgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAAGTTCCAGCGGCTCATTATGAGTTCGGAGCAAACCTTATCGACCAACGG
species | Physcomitrella patens |
transcript | PP1S367_8V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATTCGACTTCACAAAGCCACTCAATNAACGGTTTTCACTAAGTCANAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCACCAAEST: gi|18366481|gb|BJ198560.1|BJ198560
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|100390127|gb|BY989207.1|BY989207
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|67575990|gb|BJ948814.1|BJ948814
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|67717560|gb|BJ967819.1|BJ967819
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|67716961|gb|BJ967220.1|BJ967220
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|162242296|gb|FC418873.1|FC418873
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|208357650|gb|DC934116.1|DC934116
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|18342298|gb|BJ174333.1|BJ174333
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|208344796|gb|DC912630.1|DC912630
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|208374571|gb|DC940760.1|DC940760
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAEST: gi|100413081|gb|BY992578.1|BY992578
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
EST: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAG TTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
genomic: CGATTCGACTTCACAAAGCCACTCAATCAACGGTTTTCACTAAGTCACAGgtgaggagtc ... attgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAA
ggggcttctattgcgtgtgcaaagcgtacttgatcagccttgttgattgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAAGTTCCAGCGGCTCATTATGAGTTCGGAGCAAACCTTATCGACCAACGG
tgttgat putative branch site (score: 5)
ttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggataatgccggggattgttgagaagctgaaatgatttctgtggggcttctattgcgtgtgcaaagcgtacttgatcagccttgttgattgttgcagTTTGTTTATGGGCTCAGTGGAGGTGCCATCCCAAGGGGCGCAGATCATCAAAGTTCCAGCGGCTCATTATGAGTTCGGAGCAAACCTTATCGACCAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA