1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctcgtggctctcatcttgagatttctctcgactttgaagcctgatatttcgatgtgattccaatttgtcttgtagatctttactgtgtgctgacaggggcctatatatgtaattttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTGGAATGAGCAACAACCCCAAGAGCTTAGGCTTGGTCATG
species | Physcomitrella patens |
transcript | PP1S364_48V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|162203750|gb|FC378625.1|FC378625
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|18356837|gb|BJ188896.1|BJ188896
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCEST: gi|208374277|gb|DC940662.1|DC940662
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGC
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTANGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGANACTTEST: gi|162219329|gb|FC395325.1|FC395325
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|100443139|gb|BY981765.1|BY981765
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|100443175|gb|BY981801.1|BY981801
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|208376795|gb|DC902962.1|DC902962
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTANGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTEST: gi|18329902|gb|BJ161908.1|BJ161908
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
EST: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTG TGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
genomic: CAAAGAAGGGCAGGGTGACGGGCCGCCTCCTAGGCATTCAAGCTGCTTTGgtatgctcgt ... ttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTT
ttgtagatctttactgtgtgctgacaggggcctatatatgtaattttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTGGAATGAGCAACAACCCCAAGAGCTTAGGCTTGGTCATG
tgctgac putative branch site (score: 6)
ttttccccac putative PPT
tatatatgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcgtggctctcatcttgagatttctctcgactttgaagcctgatatttcgatgtgattccaatttgtcttgtagatctttactgtgtgctgacaggggcctatatatgtaattttccccacagTGCACTATCGAGCATGGACAGCGAGCACAATGCACAAGTTTGATGATACTTGGAATGAGCAACAACCCCAAGAGCTTAGGCTTGGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT