1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaataccttccaactcatttcaggagaaaacatcttacggctttttcgttgagaatcgaatcgctcggacgttacttatttccaaaaaatgggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTTTGCTGCTATATCAGCTTTGAAAATG
species | Physcomitrella patens |
transcript | PP1S35_49V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTG GAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTEST: gi|100360921|gb|BY946823.1|BY946823
genomic: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTGgtaagcttaa ... gggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
EST: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTG GAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACGGGGGCACCATATTEST: gi|208391994|gb|DC941842.1|DC941842
genomic: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTGgtaagcttaa ... gggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
EST: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTG GAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTEST: gi|67507629|gb|BJ940510.1|BJ940510
genomic: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTGgtaagcttaa ... gggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
EST: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTG GAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTEST: gi|100387958|gb|BY970703.1|BY970703
genomic: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTGgtaagcttaa ... gggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
EST: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTG GAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
genomic: GGAGAAAGTTGTTCCTGTTCTAGCCCCTGGTCGCCACAAAGGACAAGCTGgtaagcttaa ... gggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATT
tcgttgagaatcgaatcgctcggacgttacttatttccaaaaaatgggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTTTGCTGCTATATCAGCTTTGAAAATG
ttatttccaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaataccttccaactcatttcaggagaaaacatcttacggctttttcgttgagaatcgaatcgctcggacgttacttatttccaaaaaatgggtttgtagGAAAAATTGCTGTTATTGGAGGCTGCAGGGAGTACACAGGGGCACCATATTTTGCTGCTATATCAGCTTTGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT