1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgtgtgtggtgccactaaaatcagttacagaaatctcgtactcaatttctgaaatattttcctcctctaaattcatagtggaatgatcttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAAGAAGCTTGATGACGAGACTGACGTTCTTGCTC
species | Physcomitrella patens |
transcript | PP1S35_215V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAAT TCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAEST: gi|208380149|gb|DC927428.1|DC927428
genomic: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAATgtactactct ... ttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAA
EST: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAAT TCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAEST: gi|162220358|gb|FC396350.1|FC396350
genomic: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAATgtactactct ... ttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAA
EST: AGTCAATGCAGCACGCCGAGCTGGCGGCCCAATTGAGACTATCAAGAAAT TCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAEST: gi|208349962|gb|DC913670.1|DC913670
genomic: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAATgtactactct ... ttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAA
EST: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAAT TCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAA
genomic: AGTCAATGCAGCACGACGAGCTGGCGGCCCAATTGAGACTATCAAGAAATgtactactct ... ttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAA
aatttctgaaatattttcctcctctaaattcatagtggaatgatcttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAAGAAGCTTGATGACGAGACTGACGTTCTTGCTC
ctctaaa putative branch site (score: 16)
tctttt putative PPT
tgaaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgtgtggtgccactaaaatcagttacagaaatctcgtactcaatttctgaaatattttcctcctctaaattcatagtggaatgatcttttgggcagTCAACGCTGGGTCCAACAAGGCAGCTACCAGTGCTACTGGTTTGAATACAAAGAAGCTTGATGACGAGACTGACGTTCTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC