1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tacttcatttggtcacgtggttgtttaaggatgttgctcaatttcatgaaaattcagaatttttgggtgattctgttataaccaaatgtgaaatatgcagGCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG
species | Physcomitrella patens |
transcript | PP1S353_41V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAGTGTCATCACACGTTTCATGTATGACAAGTTTGACAACACGTACCAG GCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCEST: gi|18329546|gb|BJ161552.1|BJ161552
genomic: CGAGTGTCATCACACGTTTCATGTATGACAAGTTTGACAACACGTACCAGgtaatgtaag ... aaatatgcagGCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGC
EST: CGAGTGTCATCACACGTTTCATGTATGACAAGTTTGACAACACGTACCAG GCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGC
genomic: CGAGTGTCATCACACGTTTCATGTATGACAAGTTTGACAACACGTACCAGgtaatgtaag ... aaatatgcagGCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGC
atgaaaattcagaatttttgggtgattctgttataaccaaatgtgaaatatgcagGCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG
ttataac putative branch site (score: 2)
aattcagaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttcatttggtcacgtggttgtttaaggatgttgctcaatttcatgaaaattcagaatttttgggtgattctgttataaccaaatgtgaaatatgcagGCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC