1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggaaacctcaacaaatctgaagctggatgatctgcaatgtacacaggcagagtggatgattaccctggaattgatcagtactgacatccatttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAGGTGAACAAGCTGTCGGAGCTGGTACAGTGGGATCATCTGAGGCTATCA
species | Physcomitrella patens |
transcript | PP1S34_308V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|162279593|gb|FC455865.1|FC455865
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|18349497|gb|BJ181546.1|BJ181546
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|162267344|gb|FC442132.1|FC442132
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|67575429|gb|BJ948253.1|BJ948253
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|18344729|gb|BJ176770.1|BJ176770
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAEST: gi|162188417|gb|FC365015.1|FC365015
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
EST: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAG GACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCGATTACCACTGAGCTTCAGgttttagccc ... atttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAA
aggcagagtggatgattaccctggaattgatcagtactgacatccatttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAGGTGAACAAGCTGTCGGAGCTGGTACAGTGGGATCATCTGAGGCTATCA
tactgac putative branch site (score: 8)
tccattt CT-rich tract
atgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaaacctcaacaaatctgaagctggatgatctgcaatgtacacaggcagagtggatgattaccctggaattgatcagtactgacatccatttgtgcagGACCGGTGCGTGAACATGGTCGCCCGTTTGTTCAATGCACCAATTGGGGAAGGTGAACAAGCTGTCGGAGCTGGTACAGTGGGATCATCTGAGGCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - cacaggc