Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgtcctcgaccaaatcctctgataatttcttgcacttaccttctgaaggcagtagaagctgcaagattttgtaacctgaaacttcttgagctcccatgcgtgggtgtcaaatttgttctgaacttggatcgtcgcagCTACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACG

Basic information

species Physcomitrella patens
transcript PP1S343_28V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S343_28V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv17s0000g03290.t01 (Vitis vinifera), 3'ss of exon 2
gtaagcatgtcctcgaccaaatcctctgataatttcttgcacttaccttctgaaggcagtagaagctgcaagattttgtaacctgaaacttcttgagctcccatgcgtgggtgtcaaatttgttctgaacttggatcgtcgcagCTACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACG
                                      | | | | | |||| |     |         || || |  | |   |    |||         |||   |   ||  |||| |  | | | |    ||  |  |||| || || || ||||||||||| |||||||| |||||||||| ||||||||| ||  | || || |  ||| ||   || || | | |  | ||   |  
--------------------------------------gtagtgaacatctgtatattatctgtctgttaatatctctttaatagtttattcaattataagcatatatccatgctaaatctacttttatcccttatttttacagCAACTATATTTGCATATGGGCAAACCAGCAGTGGGAAGACTTACACAATGAGAGGAATAACAGAGAAAGCTGTTAATGATATCTATAAGCATATAATAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgagctcccatgcgtgggtgtcaaatttgttctgaacttggatcgtcgcagCTACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACG
                          aaatttgtt  TA-rich tract