Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctcaggacgccctgaattggggtgtaatggtggggtggcaggcagagcggggggcaatgaggagggatcggctgacgcggtgtgatgtgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGATAACTGCACGGGGCTGCAGGGATTCTTGGTGTTCAATGCTGTAGGAGG

Basic information

species Physcomitrella patens
transcript PP1S341_23V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167933|gb|FC344871.1|FC344871
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208364495|gb|DC930885.1|DC930885
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAANGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAN
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100430722|gb|BY978363.1|BY978363
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208376274|gb|DC940972.1|DC940972
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100385210|gb|BY950802.1|BY950802
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100390448|gb|BY952856.1|BY952856
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162187183|gb|FC363693.1|FC363693
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100447498|gb|CJ971797.1|CJ971797
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162153183|gb|FC329589.1|FC329589
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208367360|gb|DC939876.1|DC939876
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|18324871|gb|BJ156866.1|BJ156866
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100416761|gb|BY993074.1|BY993074
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162197748|gb|FC374998.1|FC374998
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|18366573|gb|BJ198652.1|BJ198652
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100355494|gb|BY945962.1|BY945962
EST:     TTCGGGGAAGGAGGACGCTGCNAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACANGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|18358529|gb|BJ190588.1|BJ190588
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100384352|gb|BY969483.1|BY969483
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|18360637|gb|BJ192700.1|BJ192700
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAA
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAA
EST: gi|162229157|gb|FC404516.1|FC404516
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|18331654|gb|BJ163665.1|BJ163665
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGC
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGC
EST: gi|100400971|gb|BY973035.1|BY973035
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAAGAAATTGTGGATCTGTGCCTGGACAGGGTGAGAGA-GCTGGCA
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAG-GAAGCTGGCA
EST: gi|162186501|gb|FC363265.1|FC363265
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100378281|gb|BY949772.1|BY949772
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162159253|gb|FC335106.1|FC335106
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100434951|gb|BY960886.1|BY960886
EST:     TCGGGGAAGGAGGACGCTGCAAACAACTTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGGAGAATGTG
genomic: TCGGGGAAGGAGGACGCTGCAAACAACTT-CGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGG-AGATTGTG
EST: gi|208359573|gb|DC934588.1|DC934588
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAA
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100398871|gb|BY990557.1|BY990557
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100371212|gb|BY985993.1|BY985993
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAAGGAGATTGTGGATCTGTTGCCTGGACAGGGTGAGGGAAGCTGG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAA-GGAGATTGTGGATCTGT-GCCTGGACAGGGTGAGG-AAGCTGG
EST: gi|100411179|gb|BY974509.1|BY974509
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100391720|gb|BY989519.1|BY989519
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGGGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208361994|gb|DC943463.1|DC943463
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208372920|gb|DC940551.1|DC940551
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAANGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAANCTGGCAN
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100378611|gb|BY968689.1|BY968689
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208389619|gb|DC933663.1|DC933663
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162174343|gb|FC350414.1|FC350414
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67709298|gb|BJ965114.1|BJ965114
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|208364662|gb|DC939429.1|DC939429
EST:     TTCGAGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100420027|gb|BY975938.1|BY975938
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67573333|gb|BJ946157.1|BJ946157
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67569845|gb|BJ942669.1|BJ942669
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67709999|gb|BJ965812.1|BJ965812
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100367015|gb|BY948325.1|BY948325
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100432236|gb|BY960383.1|BY960383
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100429732|gb|BY959710.1|BY959710
EST:     TTCGGGGAAGGAG-ACGCTGCAAACAACTTCGCTCGCGGNCATTATACTG                         TGGCGCAAG-AGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCA
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGG-AAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCA
EST: gi|162162283|gb|FC338065.1|FC338065
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100422216|gb|BY957914.1|BY957914
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGGCATTATACTG                         TGGGGGAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162170569|gb|FC347689.1|FC347689
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100430362|gb|BY959831.1|BY959831
EST:     TTCGGGGAAGGAGGACGCTGCCAACAACTTCGCTCGCGGGCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCT
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCT
EST: gi|208345518|gb|DC909208.1|DC909208
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|162195647|gb|FC370310.1|FC370310
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67716511|gb|BJ966771.1|BJ966771
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100411792|gb|BY992343.1|BY992343
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100390005|gb|BY989085.1|BY989085
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100445719|gb|CJ970018.1|CJ970018
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|100443679|gb|BY963776.1|BY963776
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: gi|67573330|gb|BJ946154.1|BJ946154
EST:     TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG                         TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagcggggggcaatgaggagggatcggctgacgcggtgtgatgtgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGATAACTGCACGGGGCTGCAGGGATTCTTGGTGTTCAATGCTGTAGGAGG
                           ggctgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgctcaggacgccctgaattggggtgtaatggtggggtggcaggcagagcggggggcaatgaggagggatcggctgacgcggtgtgatgtgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGATAACTGCACGGGGCTGCAGGGATTCTTGGTGTTCAATGCTGTAGGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG