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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttagtatcggttgtaccctccgtgttcgtatcactcttacaggttaactatgcctaagaatgcacggtctctaaagattgctcttgtgtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATGGCTCGCTACG

Basic information

species Physcomitrella patens
transcript PP1S33_218V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358166|gb|DC939217.1|DC939217
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|208397547|gb|DC912165.1|DC912165
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|18354238|gb|BJ186294.1|BJ186294
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|18347220|gb|BJ179266.1|BJ179266
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|100449137|gb|CJ973436.1|CJ973436
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|100443802|gb|BY963899.1|BY963899
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|18348387|gb|BJ180435.1|BJ180435
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|162158943|gb|FC333984.1|FC333984
EST:     CCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: CCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|18360140|gb|BJ192202.1|BJ192202
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|208393214|gb|DC908037.1|DC908037
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|100398162|gb|BY954119.1|BY954119
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|67704523|gb|BJ964756.1|BJ964756
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
EST: gi|67576885|gb|BJ949709.1|BJ949709
EST:     GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAG                         GTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG
genomic: GAGTGACTAACAAGACCCCGGAATTCTTGAAGTTGAATCCCATCGGAAAGgtaatacttc ... gtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaactatgcctaagaatgcacggtctctaaagattgctcttgtgtgtatgcagGTCCCAGTTCTTCAGACTCCCGACGGACCCATTTTCGAAAGTAACGCCATGGCTCGCTACG
                          ctctaaa  putative branch site (score: 3)
                             taaagatt  TA-rich tract