1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cggccagttatggattgtgtgcttcaacctgcatcttctttacttcccttgcatttacaaacctgctccttgttcttgtggtatggtctttggtgaacagCGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGAAGTGGCAGAAGCTCGTGACGTGTTTGGTGAGTCAGATGAAGAAGATGAT
species | Physcomitrella patens |
transcript | PP1S338_9V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGGGAGATTACGAAGATGAGGATGTCCAGGAAGAAGCTAGGGGCCAAAG CGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGAEST: gi|100385501|gb|BY969838.1|BY969838
genomic: GCGGGAGATTACGAAGATGAGGATGTCCAGGAAGAAGCTAGGGGCCAAAGgtagttctta ... tggtgaacagCGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGA
EST: ATGAGGATGTCCAGGAAGAAGCTAGGGGCCAAAG CGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGA
genomic: ATGAGGATGTCCAGGAAGAAGCTAGGGGCCAAAGgtagttctta ... tggtgaacagCGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGA
cccttgcatttacaaacctgctccttgttcttgtggtatggtctttggtgaacagCGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGAAGTGGCAGAAGCTCGTGACGTGTTTGGTGAGTCAGATGAAGAAGATGAT
tcttt CT-rich tract
atttacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggccagttatggattgtgtgcttcaacctgcatcttctttacttcccttgcatttacaaacctgctccttgttcttgtggtatggtctttggtgaacagCGAAGGCGAGGAAGAAGAGCAACAAGACGATGAACCGAGGGAGAGGATTGAAGTGGCAGAAGCTCGTGACGTGTTTGGTGAGTCAGATGAAGAAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - -tgcttca