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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG

Basic information

species Physcomitrella patens
transcript PP1S337_21V6.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 1
---------cagtatggagggcgttctgtactgtcctgattgcgagaca--tgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
              |||||||  ||  ||   ||     |||  | |      |||   ||||        |   | | |     |    | ||  |  | |  |    |   | |||  | |||||||||||||| |||||  | |||||| | ||||| |||||||||||||| |||||||||
agattttgatttcctggagggt-ttgcgtctagtttctgttggaaaatggccatttcgtgacgtgttgcggcgcatgcctgttgttctgtttttgcgtcagGAATTCAGAA-CCAGTAGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os11g06390.5 (Oryza sativa), 3'ss of exon 1
-cagtatggagggcgttctgtactgtcctgattgcgagaca--tgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
      |||||||  ||  ||   ||     |||  | |      |||   ||||        |   | | |     |    | ||  |  | |  |    |   | |||  | |||||||||||||| |||||  | |||||| | ||||| |||||||||||||| |||||||||
atttcctggagggt-ttgcgtctagtttctgttggaaaatggccatttcgtgacgtgttgcggcgcatgcctgttgttctgtttttgcgtcaggaattcagAA-CCAGTAGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagaca-tgttttacgacgaaaat-ttactgctc--cttagaactaa-aatcttc-----tgaaatggttgggcag-
           ||         | ||||     |   | | |   |  |||  || || ||| | ||    ||  || | | || ||||       |  |  ||  |||| ||   | | || ||||||||||||||||||||  | |||||  | || || |||||||| |||||||||||||||
----------agcacctcaagatttcctctgcacagtatagtaactatcgaaaaagatattatttctttgtttttaattgacaaccttcacgtgctacttatttttgcagAGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 1
-cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
    | | |  |  |   ||    ||| |     ||||   ||| |  | || |  ||      || ||      |||| | ||   || |   ||  ||| ||     || ||||||||||||||||||||  | |||||  | || || |||||||| |||||||||||||||
atgatttagttgaagaaatgcgtcgtcgt-----cgagt--tgtatagcaacaatgatcaggcactactacttgttaaagtatt---aactctctg--cagctcttctgtagGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g01600.1 (Oryza sativa), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctcc-----ttaga-actaaaatcttctgaaatggt-----tgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
           |   ||   | ||   |  |||  ||| |||  |        |  | ||  ||  |     | ||  ||||  |  |  | || |  |     |  |||| ||     || ||||||||||||||||||||  | |||||  | || || |||||||| |||||||||||||||
----------agtactcatcaatgatttagttg-aagaaatgcgtcgtcgtcgagttgtatagcaacaatgatcaggcactactacttgttaaagtattaactctctgcagCTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaattta-ctgctccttagaactaaaatc---ttctgaaatggttgggcagGTCGGTAT-TAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
   |||  ||     |  ||  || || |    |||    |    | |   | |  |||  | |  ||| | || | |  |    || | |     ||  |  |      || | |  |||||||||||   ||||  | || ||  | |||||||||||||| |||||||||||||||
--ttatt-agtttacttggttttgcccag----cgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACG---AGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G126190_T03 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagG--TCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
  |     |  ||      |||    ||   ||       |   |   ||   | || | ||| | ||||    |    ||| ||    |  |||  |  |  ||   | ||| |||||||||||||||||||  | |||||| | || || |||||||||||||| |||||||||
--gctgaaaatgcagctaataccaaacttgctgt------ttcctattgagatagatattctgttacttatcctttg--tctcctcgtgtttttgttccagcatcatcagTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 1
-----cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagG--TCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
     |  |   ||    |     || |  |    ||||  |     | ||  ||   | |||  ||| | ||||    |    ||| ||    |  |||  |  |  ||   | ||| |||||||||||||||||||  | |||||| | || || |||||||||||||| |||||||||
gtttcctttgctgaaaatgcagc-taataccaaacttgct-gtttcctattgagatagatatt--ctgttacttatcctttg--tctcctcgtgtttttgttccagCATCATCAGTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggt---tggg--cag-
                ||  | | |||           ||||   || |   ||||   | ||  | |||  |    ||| || ||| |||||   ||    |||   ||| ||    |  ||||||||||||||||||  | |||||  | ||||| |||||||| |||||||||||||||
---------------acttaaatttccaagccatctagcatgaactaggttaaaaaa--attgtgctttaacaagtgaatatt-tgagatggtctctgaattcagattgtctgtgcagATCAATGGCTGACGGTGAGGATATCCAGCCACTTGTGTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaat-ttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
  | ||| |        |  ||||| |   ||     ||||  |  || |  | | | | |   ||       |    | |||    | |||         |  | | |  |||||||||||| ||||||||  | |||||  | || ||||||||||| |||||||||||||||
--gcatgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 2
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTA-TTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
    |      |  |||  |    | |  ||   ||   |      ||    |  | |   || |  ||    |||      |   | || |  |       | ||  || |||||||||||| ||||||||  | |||||  | || ||||||||||| |||||||||||||||
---caaatccagtcttccttttcattcacatgttgaactaaaac--actttcatcactggttggtatttgattctatccatatgccacattgccgcttgctgcagTTCTTTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G110378_T01 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcag-
           |  |||  |    | |  ||   ||   |      ||    |  | |   || |  ||    |||      |   | || |  |      |  | | || |||||||||||| ||||||||  | |||||  | || ||||||||||| |||||||||||||||
-----------gtcttccttttcattcacatgttgaactaaaac--actttcatcactggttggtatttgattctatccatatgccacattgccgcttgctgcagttctttagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T12 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaattt-actgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
     || |        |  ||||| |   ||     ||||  |  || |  | | | | |   ||       |    | |||    | |||         |  | | |  |||||||||||| ||||||||  | |||||  | || ||||||||||| |||||||||||||||
-----tgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T09 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaat-ttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
                 |  ||||| |   ||     ||||  |  || |  | | | | |   ||       |    | |||    | |||         |  | | |  |||||||||||| ||||||||  | |||||  | || ||||||||||| |||||||||||||||
-------------caaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagttctgtagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G047055_T03 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTAT-TAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
       ||     |||||||| |       || || |||  | |     |  ||   |  ||||  ||  ||| ||    | | | |  ||  | ||   || |||  ||  |||||||||||| ||||||  | |||||| | || |||||||| |||||||| |||||||||
-------gaacagattctgtacagcaactcgtg-gaaacaaatctgcttccttaatgatgttgcttgttttaacaaa----tgcggcatcgggcgagcttttctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 1
-cagtatggagggcgtt----ctgtactgtcctgattgcgagacatgt-tttacgacg--aaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
   | |     | | ||    |  |||||   | |||   | | || | | |||         |  | || ||||| | || |    |    | |    | | | ||| ||  |    | ||||||||||||  |||||  | |||||| | || || ||||||||||||||||||||||||
taggcacatcagccttttctcccttactgaagtaattagcacatatttgtctacagtcttggtaaatgcttctcctgataaattgttttcattcatgcagATTG-CAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G047055_T04 (Zea mays), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTAT-TAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
   | | ||     |||||||| |       || || |||  | |     |  ||   |  ||||  ||  ||| ||    | | | |  ||  | ||   || |||  ||  |||||||||||| ||||||  | |||||| | || |||||||| |||||||| |||||||||
---tttagaacagattctgtacagcaactcgtg-gaaacaaatctgcttccttaatgatgttgcttgttttaacaaa----tgcggcatcgggcgagcttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 1
----------------cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
                 | ||   ||  | |||||   | |||| |||| || | || || |   ||  |  |||||     ||| |         || ||    |  |||  |  |    | | |  ||||||||||||| |||||  | |||||| | || || |||||||||||||| |||||||||
aatgcagttttcttgttaataccaag--cattctgccgtttcct-attgagatagatattctgttactgatttttaccctagcttggtctcctctcctcctagTGTTTTTGTTCCAGAATCTGT-AGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 1
cagtatggagggcgttctgtactgtcctgattgcgagacatgttt-tacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcag-
   |  |  ||  ||     | ||||||| || |  |   |||   ||| |   || |||  | ||   |   |||  | |     | |     ||      || ||| | ||| | ||||| || |  |||||  | || ||| | || |||||||||||||||||||||||||||
--cttcgttggctgta----aatgtcctggtttcacgggttgtccatacaatacaattttgttacttactgacactttacttcatggcaccctatgctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400190|gb|DC908851.1|DC908851
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100365718|gb|BY948377.1|BY948377
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100418859|gb|BY975774.1|BY975774
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|67704294|gb|BJ964527.1|BJ964527
EST:     TAGGCTGGATTCTCTTCTGTTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100417960|gb|BY993269.1|BY993269
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100400442|gb|BY954479.1|BY954479
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100437036|gb|BY979651.1|BY979651
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100422934|gb|BY958072.1|BY958072
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100392377|gb|BY953332.1|BY953332
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100431450|gb|BY960203.1|BY960203
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
                          aactaaa  putative branch site (score: 2)
       aaaatttact  TA-rich tract