1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaatttaggttttgttctctcgaatctctgttcttgaaactgcacgaaggtctttcgacatgctgttgattggcactgaattattttcttccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTGGTTTTGTGCCTTTCTCTCAGGTTTCAGCT
species | Physcomitrella patens |
transcript | PP1S32_313V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|100361411|gb|BY965827.1|BY965827
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGGACG ATCTTGTCGCACAACTCAGGAGGGEST: gi|162169717|gb|FC345254.1|FC345254
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGG
EST: GACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|208364552|gb|DC930942.1|DC930942
genomic: GACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGANGGTTTGTTGTAAATGTTGANGGCCTGCGTEST: gi|162249173|gb|FC420398.1|FC420398
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162189197|gb|FC366719.1|FC366719
genomic: GTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162156033|gb|FC332200.1|FC332200
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162252958|gb|FC429019.1|FC429019
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162174660|gb|FC351348.1|FC351348
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|18327036|gb|BJ159037.1|BJ159037
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|100426960|gb|BY977451.1|BY977451
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: AGCGGTGCGCGCAAAATGT-GGCCTGATGACGTCGTCGTCGAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGEST: gi|162196282|gb|FC375391.1|FC375391
genomic: AGCGGTGCGCGCAAA-TGTTGGC-TGATGACGTCGTCGTC-AGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTG
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162167953|gb|FC344891.1|FC344891
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|100433748|gb|BY960687.1|BY960687
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGEST: gi|162187440|gb|FC362662.1|FC362662
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTG
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|208380465|gb|DC914889.1|DC914889
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|208365201|gb|DC931167.1|DC931167
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162263939|gb|FC439208.1|FC439208
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|100384235|gb|BY969366.1|BY969366
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCANGAGGGGTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|100387097|gb|BY951496.1|BY951496
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTCANGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTEST: gi|162172210|gb|FC348775.1|FC348775
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGT
EST: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACG ATCTTGTCGCACAACTC
genomic: GGGAGCGGTGCGCGCAAATGTTGGCTGATGACGTCGTCGTCAGGGGAACGgtgggtcaat ... ccgtgtacagATCTTGTCGCACAACTC
gaaggtctttcgacatgctgttgattggcactgaattattttcttccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTGGTTTTGTGCCTTTCTCTCAGGTTTCAGCT
tgttgat putative branch site (score: 36)
ttattttcttccgt putative PPT
tgaattattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttaggttttgttctctcgaatctctgttcttgaaactgcacgaaggtctttcgacatgctgttgattggcactgaattattttcttccgtgtacagATCTTGTCGCACAACTCAGGAGGGTTTGTTGTAGATGTTGAGGGCCTGCGTGGTTTTGTGCCTTTCTCTCAGGTTTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - -ctgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gacatgc