1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttttttttttgtcttaatctttagtgcaccttatcatggatgcatacaagcatgttctgtgaactttatgcatacttacattcatcttgaggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGCACAACAAGCAAATCGTGGTATTCCTTGATTATGACGGAACACTTTCAC
species | Physcomitrella patens |
transcript | PP1S32_182V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162158818|gb|FC335341.1|FC335341
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162197334|gb|FC372296.1|FC372296
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162159618|gb|FC335796.1|FC335796
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162162061|gb|FC338852.1|FC338852
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162151358|gb|FC327487.1|FC327487
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGEST: gi|162161280|gb|FC337343.1|FC337343
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
EST: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTC GAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
genomic: ATACTCCTGAGTTATTCGACCTTGAAGCTGCTATCTATAAATCTTGGCTCgtaagcatct ... aggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCG
tacaagcatgttctgtgaactttatgcatacttacattcatcttgaggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGCACAACAAGCAAATCGTGGTATTCCTTGATTATGACGGAACACTTTCAC
tacttac putative branch site (score: 5)
aactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttttgtcttaatctttagtgcaccttatcatggatgcatacaagcatgttctgtgaactttatgcatacttacattcatcttgaggtccgcagGAAGATCATCCCTCAGCTTTGAGCTCGTTCGACAGAGTGATCAAGCAGTCGCACAACAAGCAAATCGTGGTATTCCTTGATTATGACGGAACACTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA