Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtgttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT

Basic information

species Physcomitrella patens
transcript PP1S31_322V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtg-ttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT
     |   | |   |    | | |||| || |  |   |    || | | || |||  |  |    | ||||| |||  |||   ||||  | |      |  | ||   |||| |     | ||      |       |    |   |||     ||||    | | | | || ||||  | |  ||   |  | |   
----gtaaattttctgctttcttatttcttgatccat--gccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcag-

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 3
cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtgttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT
                                                                    ||  |||      | | | || | |  | || ||  |   |   |||       ||   | |  ||||  |  |||      |     | ||||||||||| |||||||||||||| ||||| ||||     
-------------------------------------------------------------------gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattat-aggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251234|gb|FC428513.1|FC428513
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18373166|gb|BJ204768.1|BJ204768
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|22491706|gb|BU051629.1|BU051629
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162268717|gb|FC445214.1|FC445214
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18350908|gb|BJ182959.1|BJ182959
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18359549|gb|BJ191610.1|BJ191610
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTTAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|208352202|gb|DC906305.1|DC906305
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162247833|gb|FC423413.1|FC423413
EST:     CGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18350278|gb|BJ182329.1|BJ182329
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67694383|gb|BJ954616.1|BJ954616
EST:     GAAGAAGGTCGAGATCGATGACGACGNTAAGCT                         GCGTCAGTTTTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: GAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162247834|gb|FC423414.1|FC423414
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18354830|gb|BJ186889.1|BJ186889
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACAAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162220963|gb|FC396148.1|FC396148
EST:     AGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: AGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67719729|gb|BJ969988.1|BJ969988
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18326974|gb|BJ158975.1|BJ158975
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162237537|gb|FC413009.1|FC413009
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|208344627|gb|DC912573.1|DC912573
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18362285|gb|BJ194355.1|BJ194355
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|208389256|gb|DC933284.1|DC933284
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67702724|gb|BJ962957.1|BJ962957
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTNAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162231479|gb|FC407929.1|FC407929
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162275508|gb|FC451276.1|FC451276
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162251233|gb|FC428512.1|FC428512
EST:     GGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: GGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162269830|gb|FC445373.1|FC445373
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|208397139|gb|DC908153.1|DC908153
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67728115|gb|BJ978374.1|BJ978374
EST:     CAGAAGAAGGTCGAGATCGATGACGACGNTTAAGCT                         GCGTCAGTTTTATGACAAGCGGCTCGCTCAAGAGGTCAGCGNTGACCAGC
genomic: CAGAAGAAGGTCGAGATCGATGACGACG-CTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGC
EST: gi|208367071|gb|DC935913.1|DC935913
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18372723|gb|BJ204325.1|BJ204325
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162222642|gb|FC397454.1|FC397454
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18325052|gb|BJ157048.1|BJ157048
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18350569|gb|BJ182620.1|BJ182620
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162262634|gb|FC438962.1|FC438962
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162229719|gb|FC405147.1|FC405147
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162280474|gb|FC456387.1|FC456387
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTCAGCT                         GCGGCAGTTCTATGACAAGCGCGCTCGCTCAAGAGGTCAGCGGTGACCAGC
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCG-GCTCGCTCAAGAGGTCAGCGGTGACCAGC
EST: gi|162279396|gb|FC455512.1|FC455512
EST:     CGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162276605|gb|FC452183.1|FC452183
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18369604|gb|BJ201692.1|BJ201692
EST:     CCACCACAGGGTTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCACCACAGGG-TGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67571071|gb|BJ943895.1|BJ943895
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67702706|gb|BJ962939.1|BJ962939
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTGAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162202122|gb|FC377523.1|FC377523
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTNAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|37852243|gb|BJ610251.1|BJ610251
EST:     GTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: GTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162269829|gb|FC445372.1|FC445372
EST:     TGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: TGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|18329230|gb|BJ161236.1|BJ161236
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67703838|gb|BJ964071.1|BJ964071
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTNAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162262633|gb|FC438961.1|FC438961
EST:     AAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: AAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162220964|gb|FC396149.1|FC396149
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|67719854|gb|BJ970113.1|BJ970113
EST:     CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|37850917|gb|BJ608925.1|BJ608925
EST:     CAGAAGAAGGTCGAGATCGATGACGACGNTAAGCT                         GCGTCAGTTNTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: CAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
EST: gi|162268716|gb|FC445213.1|FC445213
EST:     GTCGAGATCGATGACGACGCTAAGCT                         GCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT
genomic: GTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 38

CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtg ... cgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgggtgttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT
                          gtttgac  putative branch site (score: 38)
                                               tatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtgttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
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