1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atttaaccgcctgtagtctgtagttagccagtattaagttggctgtagaaatgagagttggtgcgagagctaactgaggttatgaatgcgacgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTGTGAAGTGGTGGATGGGGGTGAATTGAAGTCCCGTCGTCACCTCAACGT
species | Physcomitrella patens |
transcript | PP1S318_21V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTEST: gi|162155347|gb|FC331246.1|FC331246
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTEST: gi|162158981|gb|FC334828.1|FC334828
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTEST: gi|162267890|gb|FC444491.1|FC444491
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTEST: gi|162173132|gb|FC348705.1|FC348705
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTEST: gi|100369821|gb|BY967400.1|BY967400
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
EST: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATG GAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
genomic: CGATGACTTTGTGACCGATGTGGAAATAGGCGATACTTTGCTGATTGATGgtgatttttc ... acgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACT
tagaaatgagagttggtgcgagagctaactgaggttatgaatgcgacgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTGTGAAGTGGTGGATGGGGGTGAATTGAAGTCCCGTCGTCACCTCAACGT
agctaac putative branch site (score: 4)
ttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaaccgcctgtagtctgtagttagccagtattaagttggctgtagaaatgagagttggtgcgagagctaactgaggttatgaatgcgacgagaacagGAGGCATGATGTCGCTAGAGGTGAAGGGCAAGACCCACGAGGAAGTGTACTGTGAAGTGGTGGATGGGGGTGAATTGAAGTCCCGTCGTCACCTCAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG