1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatttttatttttatttttttccaatgcgaaattcgacgtgatattttctatgattatatgttccaaacatctaatgtacaagccttcatgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAATAACCACTGTGGATGGCAAGATAGAAGTCAGGGGTGACGCCGAATATG
species | Physcomitrella patens |
transcript | PP1S309_8V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGG GCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAEST: gi|208387836|gb|DC941405.1|DC941405
genomic: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGGgtaagacaat ... tgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
EST: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGG GCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAEST: gi|100395116|gb|BY953607.1|BY953607
genomic: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGGgtaagacaat ... tgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
EST: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGG GCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAEST: gi|100439779|gb|BY962103.1|BY962103
genomic: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGGgtaagacaat ... tgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
EST: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGG GCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAEST: gi|208372043|gb|DC940225.1|DC940225
genomic: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGGgtaagacaat ... tgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
EST: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGG GCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
genomic: ATACTTCTGACGCTTATGGGCCACACTCGAATGAGAAATTGCTCGGGCGGgtaagacaat ... tgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCA
ttttctatgattatatgttccaaacatctaatgtacaagccttcatgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAATAACCACTGTGGATGGCAAGATAGAAGTCAGGGGTGACGCCGAATATG
atctaat putative branch site (score: 7)
ccttcat putative PPT
tatgattatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttttatttttatttttttccaatgcgaaattcgacgtgatattttctatgattatatgttccaaacatctaatgtacaagccttcatgttcgtcagGCTCTGAAGGGTTTGCCTCGTGACGAAGTCCAGCTGGCAACGAAGTTCGCAATAACCACTGTGGATGGCAAGATAGAAGTCAGGGGTGACGCCGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT