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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaagtaatgtattcttttgctacatcactgaaatgagtttcggacagaaacctggaggcgtataccaaaactatgtgattaaggagtttgttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG

Basic information

species Physcomitrella patens
transcript PP1S309_84V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416916|gb|BY993152.1|BY993152
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18364854|gb|BJ196927.1|BJ196927
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67712630|gb|BJ966079.1|BJ966079
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18364847|gb|BJ196920.1|BJ196920
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18367853|gb|BJ199936.1|BJ199936
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18357408|gb|BJ189467.1|BJ189467
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18331326|gb|BJ163336.1|BJ163336
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208361278|gb|DC930864.1|DC930864
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208353409|gb|DC938686.1|DC938686
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67709777|gb|BJ965593.1|BJ965593
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100418832|gb|BY975761.1|BY975761
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208370793|gb|DC936197.1|DC936197
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18356323|gb|BJ188382.1|BJ188382
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100391292|gb|BY971583.1|BY971583
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18345809|gb|BJ177852.1|BJ177852
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67702657|gb|BJ962890.1|BJ962890
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67704163|gb|BJ964396.1|BJ964396
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100443004|gb|BY963499.1|BY963499
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTGTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208389928|gb|DC937759.1|DC937759
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18359051|gb|BJ191111.1|BJ191111
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208393363|gb|DC942475.1|DC942475
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18353233|gb|BJ185288.1|BJ185288
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67716800|gb|BJ967059.1|BJ967059
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67702193|gb|BJ962426.1|BJ962426
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18351302|gb|BJ183354.1|BJ183354
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100370194|gb|BY985289.1|BY985289
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100407403|gb|BY991684.1|BY991684
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18374342|gb|BJ205920.1|BJ205920
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100450224|gb|CJ974156.1|CJ974156
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100390873|gb|BY989356.1|BY989356
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAGGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67719585|gb|BJ969844.1|BJ969844
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|162271003|gb|FC447408.1|FC447408
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18352108|gb|BJ184162.1|BJ184162
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208357982|gb|DC943080.1|DC943080
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100388397|gb|BY951999.1|BY951999
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100409472|gb|BY992028.1|BY992028
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18362200|gb|BJ194270.1|BJ194270
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208389902|gb|DC937733.1|DC937733
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18367755|gb|BJ199838.1|BJ199838
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18371268|gb|BJ202870.1|BJ202870
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100408961|gb|BY974303.1|BY974303
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208389487|gb|DC942194.1|DC942194
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67717293|gb|BJ967552.1|BJ967552
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208389270|gb|DC933298.1|DC933298
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67709719|gb|BJ965535.1|BJ965535
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67702327|gb|BJ962560.1|BJ962560
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCACA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18325917|gb|BJ157916.1|BJ157916
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67701666|gb|BJ961899.1|BJ961899
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208367329|gb|DC939859.1|DC939859
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAANAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67710128|gb|BJ965863.1|BJ965863
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208366788|gb|DC940102.1|DC940102
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100435098|gb|BY979071.1|BY979071
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18348603|gb|BJ180652.1|BJ180652
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67717669|gb|BJ967928.1|BJ967928
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18342424|gb|BJ174459.1|BJ174459
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208387109|gb|DC941281.1|DC941281
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100388056|gb|BY988529.1|BY988529
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100410315|gb|BY992045.1|BY992045
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67573346|gb|BJ946170.1|BJ946170
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67709425|gb|BJ965241.1|BJ965241
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208375286|gb|DC940439.1|DC940439
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|67717837|gb|BJ968096.1|BJ968096
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|100424875|gb|BY976860.1|BY976860
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|18327000|gb|BJ159001.1|BJ159001
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
EST: gi|208394373|gb|DC942533.1|DC942533
EST:     TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGG                         GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA
genomic: TAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 33 (downstream exon)
Score: 4

GGCCGCAACAGCGATGATCCGATCTTCTGCTGCTCTCGGCAGCTCCTCCCTAAGGGCGTCGTCCACTAGCAGGGGACACGTCTCAGTCTCCACCTCAGGGgtgcgtccat ... gttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaaacctggaggcgtataccaaaactatgtgattaaggagtttgttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG
                                          tttgtttt  CT-rich tract
                      aaaactat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaatgtattcttttgctacatcactgaaatgagtttcggacagaaacctggaggcgtataccaaaactatgtgattaaggagtttgttttgacagGTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG

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