Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtttgggactctgtaacccaacctaaaacccgtgatacaaggacgtggtgatttggaaaatgaattattcactgtacacattttccgattattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAGCTCGGCCAGTGAACGGTGAAATTATAGACTGTCATGTGACTAGGATCCC

Basic information

species Physcomitrella patens
transcript PP1S306_29V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7286457|gb|AW598944.1|AW598944
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAA                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15320283|gb|BI488079.1|BI488079
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19789824|gb|BQ041533.1|BQ041533
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19783502|gb|BQ040027.1|BQ040027
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37846930|gb|BJ604938.1|BJ604938
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67721713|gb|BJ971972.1|BJ971972
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGAACAGGCTGTGGGCAAAGAAGAAAGCTGA
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGA-CAGGCTGTGGGCAAAGAAGAAAGCTGA
EST: gi|13250918|gb|BG361821.1|BG361821
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15728395|gb|BI740766.1|BI740766
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162240925|gb|FC415204.1|FC415204
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|18335244|gb|BJ167262.1|BJ167262
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19788135|gb|BQ040726.1|BQ040726
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|18342535|gb|BJ174570.1|BJ174570
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15729298|gb|BI741245.1|BI741245
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37845445|gb|BJ603453.1|BJ603453
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162218172|gb|FC394996.1|FC394996
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162239706|gb|FC417105.1|FC417105
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162203110|gb|FC378505.1|FC378505
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7584268|gb|AW700164.1|AW700164
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|6102232|gb|AW126702.1|AW126702
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162241828|gb|FC418083.1|FC418083
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37851429|gb|BJ609437.1|BJ609437
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67722648|gb|BJ972907.1|BJ972907
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACCAGTGCTCTGGACCAGGCTGTGGGCAAAGAAGAAAGCTG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGAC-AGTGCTCTGGAC-AGGCTGTGGGCAAAGAAGAAAGCTG
EST: gi|15262163|gb|BI437473.1|BI437473
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37839261|gb|BJ597269.1|BJ597269
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162247659|gb|FC420571.1|FC420571
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37840775|gb|BJ598783.1|BJ598783
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7207638|gb|AW561578.1|AW561578
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162240924|gb|FC415203.1|FC415203
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162247660|gb|FC420572.1|FC420572
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15327182|gb|BI487710.1|BI487710
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19789868|gb|BQ041561.1|BQ041561
EST:     ATACTGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCTGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|6102421|gb|AW126891.1|AW126891
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|13250822|gb|BG361716.1|BG361716
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15727744|gb|BI740442.1|BI740442
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19780723|gb|BQ039606.1|BQ039606
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162239705|gb|FC417104.1|FC417104
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19778991|gb|BQ039394.1|BQ039394
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15327619|gb|BI488373.1|BI488373
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|13315423|gb|BG409078.1|BG409078
EST:     ATACCGGCCAGTTCACCACTTTTG-CTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162221076|gb|FC398328.1|FC398328
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7583742|gb|AW699648.1|AW699648
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162238398|gb|FC417357.1|FC417357
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19790772|gb|BQ042046.1|BQ042046
EST:     ATACCGGCCAGTTCACCTCTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162254633|gb|FC429483.1|FC429483
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67726564|gb|BJ976823.1|BJ976823
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|2950256|gb|Z98069.1|Z98069
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7207560|gb|AW561608.1|AW561608
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGAGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19781292|gb|BQ039683.1|BQ039683
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15320294|gb|BI488100.1|BI488100
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67720906|gb|BJ971165.1|BJ971165
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162215357|gb|FC391125.1|FC391125
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162253605|gb|FC430343.1|FC430343
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7648076|gb|AW739059.1|AW739059
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAN                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67726878|gb|BJ977137.1|BJ977137
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162241564|gb|FC414686.1|FC414686
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162183291|gb|FC360441.1|FC360441
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|13250044|gb|BG360947.1|BG360947
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAA                         GGCGATGCCGACAGTGCTCTTGACAAGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67702406|gb|BJ962639.1|BJ962639
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAA
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAA
EST: gi|162234314|gb|FC410060.1|FC410060
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67719036|gb|BJ969295.1|BJ969295
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15327563|gb|BI488317.1|BI488317
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|162259955|gb|FC435258.1|FC435258
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7287438|gb|AW599925.1|AW599925
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15327136|gb|BI487633.1|BI487633
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19789690|gb|BQ041453.1|BQ041453
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|18368598|gb|BJ200683.1|BJ200683
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|19788802|gb|BQ040934.1|BQ040934
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7067164|gb|AW497019.1|AW497019
EST:     TAC-GGCCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: TACCGGCC-AGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|37821676|gb|BJ579742.1|BJ579742
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|18366549|gb|BJ198628.1|BJ198628
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|13315049|gb|BG408760.1|BG408760
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|15261578|gb|BI436888.1|BI436888
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67718411|gb|BJ968670.1|BJ968670
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7647950|gb|AW738933.1|AW738933
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|67704137|gb|BJ964370.1|BJ964370
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGG
EST: gi|67718067|gb|BJ968326.1|BJ968326
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
EST: gi|7067423|gb|AW497278.1|AW497278
EST:     ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTACGTGCTCAG                         GGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG
genomic: ATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 76

TGTCGCTTCAGTTCAGCTGAATGTGGGTCACGTTGACGAGAACGGCGTGTATACCGGCCAGTTCACCACTTTTGCCTTGTGCGGCTTCGTCCGTGCTCAGgtttgtgaca ... tattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAGCTCGGCCAGTGAACGGTGAAATTATAGACTGTCATGTGACTAGGATCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtgatttggaaaatgaattattcactgtacacattttccgattattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAGCTCGGCCAGTGAACGGTGAAATTATAGACTGTCATGTGACTAGGATCCC
                                            ttatttt  CT-rich tract
            aaaatgaattattca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtttgggactctgtaacccaacctaaaacccgtgatacaaggacgtggtgatttggaaaatgaattattcactgtacacattttccgattattttgcagGGCGATGCCGACAGTGCTCTGGACAGGCTGTGGGCAAAGAAGAAAGCTGAGCTCGGCCAGTGAACGGTGAAATTATAGACTGTCATGTGACTAGGATCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtaca