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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctagaaggcttatgagagtcttgattaaatcgatggaacgtcattactcttctgaattgtagcgtctaacactttcactgtgggattgattcttgtagATGATTATAAATACGCCGCCAG

Basic information

species Physcomitrella patens
transcript PP1S2_70V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67570054|gb|BJ942878.1|BJ942878
EST:     GTGGAACTTGCAGCTCTTCTTCATGACGTTG                         ATGATTATAAATACGCCGCCAG
genomic: GTGGAACTTGCAGCTCTTCTTCATGACGTTGgtaggacatg ... attcttgtagATGATTATAAATACGCCGCCAG
EST: gi|37829669|gb|BJ587681.1|BJ587681
EST:     GTGGAACTTGCAGCTCTTCTTCATGACGTTG                         ATGATTATAAATACGCCGCCAG
genomic: GTGGAACTTGCAGCTCTTCTTCATGACGTTGgtaggacatg ... attcttgtagATGATTATAAATACGCCGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcttctgaattgtagcgtctaacactttcactgtgggattgattcttgtagATGATTATAAATACGCCGCCAG
                                              ttcttgt  CT-rich tract
           aattgta  TA-rich tract