1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccaaagagcaaaagatatcactatagggtcaggtttgtaagttttcttctagtgggtttgagttgatctcgatcactaagtttggtgtggcttggattagATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAATCTTTTGAATGACGTGATGAGTGCACTGAGCCCTGGTCTTAAGCGTGACG
species | Physcomitrella patens |
transcript | PP1S29_323V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGTCAAAGAATACCTGGAGACGGTTCTTCGACGTTCGCAGTTTTTGGG ATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAATEST: gi|22132122|gb|BQ826992.1|BQ826992
genomic: ACTGTCAAAGAATACCTGGAGACGGTTCTTCGACGTTCGCAGTTTTTGGGgtatgttttt ... cttggattagATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAAT
EST: ACTGTCAAAGAATACCTGGAGACGGTTCTTCGACGTTCGCAGTTTTTGGG ATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAAT
genomic: ACTGTCAAAGAATACCTGGAGACGGTTCTTCGACGTTCGCAGTTTTTGGGgtatgttttt ... cttggattagATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAAT
cttctagtgggtttgagttgatctcgatcactaagtttggtgtggcttggattagATCTTTGATGGCCATAATGGATCAGCAGCTGCAATTTACACCAAAGAAAATCTTTTGAATGACGTGATGAGTGCACTGAGCCCTGGTCTTAAGCGTGACG
agttgat putative branch site (score: 6)
taagttt TA-rich tract