1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtataatctctttaagcgtgatttctcttcttgggcgagacttggtcttaatgctgctggaatacctcatacgttgttggtattccatgactcctaaattatgattgcatttggtgtttgttttaacatttattcagtttgcgaaggatttgattgaagaacctcataaaatatttatgttgtctctggtatgcagTCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTATTGACGAGGTTGATAGCTTTTTGGGACAGCGTCGTGTCACTGAGCATGA
species | Physcomitrella patens |
transcript | PP1S29_307V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCATCGCAAATTTGATGAGCAAGTGGTTCGGTGATGCTCAGAAGCTAG TCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTAEST: gi|162244983|gb|FC424941.1|FC424941
genomic: CCGCATCGCAAATTTGATGAGCAAGTGGTTCGGTGATGCTCAGAAGCTAGgtataatctc ... tggtatgcagTCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTA
EST: CCGCATCGCAAATTTGATGAGCAAGTGGTTCGGTGATGCTCAGAAGCTAG TCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTA
genomic: CCGCATCGCAAATTTGATGAGCAAGTGGTTCGGTGATGCTCAGAAGCTAGgtataatctc ... tggtatgcagTCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTA
cgaaggatttgattgaagaacctcataaaatatttatgttgtctctggtatgcagTCACAGCAGTTTTTACCCTAGCCTACAAACTGCAGCCCTCGATCATATTTATTGACGAGGTTGATAGCTTTTTGGGACAGCGTCGTGTCACTGAGCATGA
atttgat putative branch site (score: 8)
ttgtctct putative PPT
tcataaaatatttatg TA-rich tract