Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttggacatcccgatgagttggtgggcttttagggttttgggcattttgccgggtggactcttggaaggttttgaatctgttaattttggtgctgagaatctaggtttttttttttttttttttttttttttttttttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGTTCCAGTTCCCGGAGGGTACCGTTGAGTTGTACGCGGAAAAGGTTAACAA

Basic information

species Physcomitrella patens
transcript PP1S29_222V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacgttggacatcccgatgagttggtgggcttttagggttttgggcattttgccgggtggactcttggaaggttttgaatctgttaattttggtgctgagaatctaggtttttttttttttttttttttttttttttttttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGTTCCAGTTCCCGGAGGGTACCGTTGAGTTGTACGCGGAAAAGGTTAACAA
                                                            |  | ||||    ||||   |    |   | || | |      | |  |||| | |  | |   |||  |  || | | |||| | |||||||||||||| | ||||||||||| ||||||||  |||| || ||| | ||| | || ||  |||  |  |||||| | || || || ||||||   ||
------------------------------------------------------------gtatgttggtgcattttcgttaaccttgctctgattcgacctttttttgtttctatgatatcaatttgatgattctctgtttggtttagGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAATTTCCTCAGGACAGTGTTGAGCTTTATGCTGAGAAGGTTGCTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833126|gb|BJ591138.1|BJ591138
EST:     ATGGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: AT-GCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259901|gb|FC436036.1|FC436036
EST:     GCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: GCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|100378962|gb|BY986505.1|BY986505
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67709528|gb|BJ965344.1|BJ965344
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67717578|gb|BJ967837.1|BJ967837
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162276013|gb|FC452289.1|FC452289
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162238647|gb|FC418191.1|FC418191
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162227653|gb|FC402334.1|FC402334
EST:     CCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37848305|gb|BJ606313.1|BJ606313
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18342128|gb|BJ174163.1|BJ174163
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67726093|gb|BJ976352.1|BJ976352
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259362|gb|FC436227.1|FC436227
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37821206|gb|BJ579272.1|BJ579272
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37839877|gb|BJ597885.1|BJ597885
EST:     CCGAGATTATCATTCGCGCCACTCGCACCCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CCGAGATTATCATCCGCGCCACTCGCA-CCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18356425|gb|BJ188484.1|BJ188484
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18343666|gb|BJ175704.1|BJ175704
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162254376|gb|FC430511.1|FC430511
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18361069|gb|BJ193133.1|BJ193133
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCG-T
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18335223|gb|BJ167241.1|BJ167241
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162226892|gb|FC403080.1|FC403080
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18325130|gb|BJ157126.1|BJ157126
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGN                         GTGAGAAGGGACGCAGGATTAGGGAGTTG
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTG
EST: gi|37838960|gb|BJ596968.1|BJ596968
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGC-GT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37845113|gb|BJ603121.1|BJ603121
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259569|gb|FC435496.1|FC435496
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|208363095|gb|DC958008.1|DC958008
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGCCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18335112|gb|BJ167130.1|BJ167130
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67726844|gb|BJ977103.1|BJ977103
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18338462|gb|BJ170486.1|BJ170486
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18330673|gb|BJ162679.1|BJ162679
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|208362665|gb|DC939533.1|DC939533
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGCCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162251398|gb|FC427689.1|FC427689
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18352298|gb|BJ184352.1|BJ184352
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18342319|gb|BJ174354.1|BJ174354
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18367767|gb|BJ199850.1|BJ199850
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18350622|gb|BJ182673.1|BJ182673
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|19790485|gb|BQ041896.1|BQ041896
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162254375|gb|FC430510.1|FC430510
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18372240|gb|BJ203842.1|BJ203842
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37821439|gb|BJ579505.1|BJ579505
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162222971|gb|FC399927.1|FC399927
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67720681|gb|BJ970940.1|BJ970940
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259363|gb|FC436228.1|FC436228
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162217178|gb|FC392542.1|FC392542
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162247018|gb|FC422192.1|FC422192
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259902|gb|FC436037.1|FC436037
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67719996|gb|BJ970255.1|BJ970255
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGA
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGA
EST: gi|18351686|gb|BJ183738.1|BJ183738
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67718049|gb|BJ968308.1|BJ968308
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67726548|gb|BJ976807.1|BJ976807
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162274783|gb|FC450524.1|FC450524
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18341762|gb|BJ173797.1|BJ173797
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18329334|gb|BJ161340.1|BJ161340
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162222970|gb|FC399926.1|FC399926
EST:     CCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162238646|gb|FC418190.1|FC418190
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162226891|gb|FC403079.1|FC403079
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162264071|gb|FC439925.1|FC439925
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|100361910|gb|BY947688.1|BY947688
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162274782|gb|FC450523.1|FC450523
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67724505|gb|BJ974764.1|BJ974764
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37829948|gb|BJ587960.1|BJ587960
EST:     GAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: GAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37833361|gb|BJ591373.1|BJ591373
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18362632|gb|BJ194703.1|BJ194703
EST:     CATGCGTACCGAGATTATCATTCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGN
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162227667|gb|FC402335.1|FC402335
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162272710|gb|FC448336.1|FC448336
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162206864|gb|FC382726.1|FC382726
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162264070|gb|FC439924.1|FC439924
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162259568|gb|FC435495.1|FC435495
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37820999|gb|BJ579065.1|BJ579065
EST:     CGAGATTATCATCCGCGCCCACTTC-CACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CGAGATTATCATCCGCG-CCAC-TCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18340063|gb|BJ172091.1|BJ172091
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67718357|gb|BJ968616.1|BJ968616
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67719120|gb|BJ969379.1|BJ969379
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162247019|gb|FC422193.1|FC422193
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18332424|gb|BJ164437.1|BJ164437
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67704567|gb|BJ964800.1|BJ964800
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67727433|gb|BJ977692.1|BJ977692
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|37822861|gb|BJ580927.1|BJ580927
EST:     CCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|19788536|gb|BQ040786.1|BQ040786
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|162206865|gb|FC382727.1|FC382727
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67712794|gb|BJ966243.1|BJ966243
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|67702186|gb|BJ962419.1|BJ962419
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
EST: gi|18334395|gb|BJ166412.1|BJ166412
EST:     CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT
genomic: CATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 58

CGGGAGCTCGCCGAAGATGGGTACTCCGGCGTTGAGGTGCGCGTCACCCCCATGCGTACCGAGATTATCATCCGCGCCACTCGCACCCAGAACGTGTTGGgtacgttgga ... tttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGTTCCAGTTCCCGGAGGGTACCGTTGAGTTGTACGCGGAAAAGGTTAACAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgagaatctaggtttttttttttttttttttttttttttttttttgatgtagGTGAGAAGGGACGCAGGATTAGGGAGTTGACATCCGTTGTCCAGAAGCGGTTCCAGTTCCCGGAGGGTACCGTTGAGTTGTACGCGGAAAAGGTTAACAA
                                            ttttgat  putative branch site (score: 58)
         tctaggtttttttttt  CT-rich tract
               tttttttttttttttt  TA-rich tract