1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgcaatcaggtttattgtgaaacttgattgtaggcttttgcgactggtatgtttttgacattcgagaactgaaatcgcggatatttttatttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG
species | Physcomitrella patens |
transcript | PP1S299_37V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCNTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208388439|gb|DC957049.1|DC957049
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAACTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208400674|gb|DC908971.1|DC908971
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208351479|gb|DC921784.1|DC921784
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GNCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208376965|gb|DC936771.1|DC936771
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAACTGCTCTCTCAAEST: gi|208356325|gb|DC957359.1|DC957359
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208358616|gb|DC949951.1|DC949951
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|37832955|gb|BJ590967.1|BJ590967
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: AAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208384733|gb|DC907150.1|DC907150
genomic: AAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208378991|gb|DC922837.1|DC922837
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|100358057|gb|BY965450.1|BY965450
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAGGT-CAAAGGACAAATGCEST: gi|100384951|gb|BY969686.1|BY969686
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGC
EST: CCTGGANGA-CGTAGGCCAGACGTTCACTTCGGTTTATGNAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGAEST: gi|208370657|gb|DC936145.1|DC936145
genomic: CCTGGA-GAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208345784|gb|DC921025.1|DC921025
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|100447337|gb|CJ971636.1|CJ971636
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTANGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAA-GTTCAAAGGACAAATGCAAEST: gi|208386416|gb|DC937083.1|DC937083
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAEST: gi|208392391|gb|DC907896.1|DC907896
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
EST: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGA AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
genomic: GCCTGGAGAACGTAGGCCAGACGTTCACTTCGGTTTATGAAATGCAGCGAgtgagtctta ... atttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAA
ctggtatgtttttgacattcgagaactgaaatcgcggatatttttatttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG
ttttgac putative branch site (score: 3)
tttttattt putative PPT
atatttttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcaatcaggtttattgtgaaacttgattgtaggcttttgcgactggtatgtttttgacattcgagaactgaaatcgcggatatttttatttgtgcagAGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG