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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagtctaatcaattttctgcattaggatttgggtctttctttcgaatgaatttactttccctttttaaagttcttgtatggttttgagaattcaattccttgaccttgtcgaagtaacatccccttcagATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGTGGTACAATCGCGTCCATATTTCTTCGAATACCTCACTACGTGGATGGCT

Basic information

species Physcomitrella patens
transcript PP1S298_23V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67718218|gb|BJ968477.1|BJ968477
EST:     GTCTCGTACAGTGGACGATCAGACCTGTACCTTTACTTTTTGAATACAAG                         ATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGT
genomic: GTCTCGTACAGTGGACGATCAGACCTGTACCTTTACTTTTTGAATACAAGgtttgagtct ... tccccttcagATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGT
EST: gi|67726705|gb|BJ976964.1|BJ976964
EST:     GTCTCGTACAGTGGACGATCAGACCTGTACCTTTACTTTTTGAATACAAG                         ATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGT
genomic: GTCTCGTACAGTGGACGATCAGACCTGTACCTTTACTTTTTGAATACAAGgtttgagtct ... tccccttcagATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatggttttgagaattcaattccttgaccttgtcgaagtaacatccccttcagATTTTCTTGAGGGATATAAATTCGCACCTCCTATCTTGAAGAATTTTAAGTGGTACAATCGCGTCCATATTTCTTCGAATACCTCACTACGTGGATGGCT
                                     aagtaac  putative branch site (score: 2)
                                           catccccttc  CT-rich tract
              aattcaatt  TA-rich tract