1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcgtactgtgcgaatctttttccagccttatatgggatgtccctacatctatatgtgctgatcatttcgatcaatttctggtgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGAG
species | Physcomitrella patens |
transcript | PP1S295_28V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|67716278|gb|BJ966538.1|BJ966538
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|208372289|gb|DC936447.1|DC936447
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|100377699|gb|BY986358.1|BY986358
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGGGAGGATGTGCAGGCATTATCTCCTGEST: gi|100356111|gb|BY946202.1|BY946202
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|67508414|gb|BJ941281.1|BJ941281
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|208355715|gb|DC910613.1|DC910613
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGEST: gi|208374316|gb|DC940673.1|DC940673
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
EST: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCGTCGTTAATGGAG TGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
genomic: TTGGACTACACAGAAAGTCTTCCATCTCTTGAATTTCATCGTTAATGGAGgtgcgtactg ... tgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTG
atgtccctacatctatatgtgctgatcatttcgatcaatttctggtgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGAG
tgctgat putative branch site (score: 15)
atctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtactgtgcgaatctttttccagccttatatgggatgtccctacatctatatgtgctgatcatttcgatcaatttctggtgtattgcagTGCGCGCCGCAGTTTTTTGCTTCCGTGAGGATGTGCAGGCATTATCTCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG