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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgcctccagcatcgctgtctctatcatctcttgatgagggtgcaaatctcttacagcatggaggctctgacatttcacggtttcgttgctcttgcagTGTCTGTTGAGCAGGTACTACATATAGTGTATCAACCACAGGCTATATTTCGAATCAAGCCTGTCACCCGTTGTTCTGCTAGCATACCTG

Basic information

species Physcomitrella patens
transcript PP1S28_215V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325865|gb|BJ157863.1|BJ157863
EST:     CGACAAAGAACTCGTTGGAAGCTTGGGAGCCCACCTGAAACAGAACAGAG                         TGTCTGTTGAGCAGGTACTACATATAGTGTATCAACCACAGGCTATATTTC
genomic: CGACAAAGAACTCGTTGGAAGCTTGGGAGCCCACCTGAAACAGAACAGAGgtataagcac ... gctcttgcagTGTCTGTTGAGCAGGTACTACATATAGTGTATCAACCACAGGCTATATTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatctcttacagcatggaggctctgacatttcacggtttcgttgctcttgcagTGTCTGTTGAGCAGGTACTACATATAGTGTATCAACCACAGGCTATATTTCGAATCAAGCCTGTCACCCGTTGTTCTGCTAGCATACCTG
                      ctctgac  putative branch site (score: 3)
 ttgctctt  putative PPT