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gtgggaccatcctggatagaatacaatttgattgcagaaatagctcatttttactattcgatgagtacttcttaacgatgaatcttttctaataagtactgaaatggtgtatgtgcttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAAGAGAGAATGATGAGTTATTTTTTGTGTTCGAGTACATG
species | Physcomitrella patens |
transcript | PP1S28_184V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAG TCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAEST: gi|162171440|gb|FC346715.1|FC346715
genomic: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAGgtgggaccat ... ttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATA
EST: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAG TCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAEST: gi|162169093|gb|FC345983.1|FC345983
genomic: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAGgtgggaccat ... ttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATA
EST: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAG TCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAEST: gi|162256739|gb|FC432633.1|FC432633
genomic: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAGgtgggaccat ... ttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATA
EST: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAG TCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATA
genomic: AGAGGAAGTTTTACTCTTGGGATGAATGCATGAACCTTAGAGAGGTCAAGgtgggaccat ... ttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATA
ttaacgatgaatcttttctaataagtactgaaatggtgtatgtgcttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAAGAGAGAATGATGAGTTATTTTTTGTGTTCGAGTACATG
aatcttttctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaccatcctggatagaatacaatttgattgcagaaatagctcatttttactattcgatgagtacttcttaacgatgaatcttttctaataagtactgaaatggtgtatgtgcttgattacagTCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAAGAGAGAATGATGAGTTATTTTTTGTGTTCGAGTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA