Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattaaagatatcatttgtttcagattggctgacatttattgcgaaagtaggtcatgttgacttttttcgtaatgctgatttgttcttctgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCTGAGACAGATCTTCAACGGCGTGTTCATGAAGGTGAACAAGGCCACCGTA

Basic information

species Physcomitrella patens
transcript PP1S28_10V6.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 3
aaattaaagatatcatttgtttcagattggctgacatttattgcgaaagtaggtcatgttgacttttttcgtaatgctgatttgttctt-ctgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAG---ATCATGCAGCTGTTGAGGCTGAGACAGATCTTCAACGGCGTGTTCATGAAGGTGAACAAGGCCACCGTA
                                 | |||  ||| |||||  |    |||  |     ||| |    ||     |||||| || | ||  |   |||| |   ||  |   || || |  |||   | |||| |  || | | |  ||| |    | |    | | |                            
-------------------------------gtaaattccttgtgaaagctgcgattgtgaaacgagttc-tctgactatcacgttctttcttttatagATCTTCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGA-GAGTCGAGCCGTACGTGACTTACGG------------------------

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 3
aaattaaagatatcatttgtttcagattggctgacatttattgcgaaagtag--gtcatgttgacttttttcgtaatgctg-atttgttcttctgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAG---ATCATGCAGCTGTTGAGGCTGAGACAGATCTTCAACGGCGTGTTCATGAAGGTGAACAAGGCCACCGTA
                                 | |||  ||| |||||| |   |  || |     || || || |     |||  ||||| | ||  ||    |||| |   ||  |   || || |  |||   | |||| |  || | | |  ||| |    | |    | | |                            
-------------------------------gtaaattccttgtgaaagttgcgattgtgatacgagttctcttactatcacattctttcttttatagATCT---TCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGA-GAGTCGAGCCGTACGTGACTTACGG------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7147733|gb|AW509598.1|AW509598
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|19784792|gb|BQ040234.1|BQ040234
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162213471|gb|FC389148.1|FC389148
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162202534|gb|FC380049.1|FC380049
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162272020|gb|FC448438.1|FC448438
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162261690|gb|FC438123.1|FC438123
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18351768|gb|BJ183820.1|BJ183820
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67720481|gb|BJ970740.1|BJ970740
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67727087|gb|BJ977346.1|BJ977346
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162261689|gb|FC438122.1|FC438122
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|6167223|gb|AW145487.1|AW145487
EST:     GTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: GTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18340297|gb|BJ172325.1|BJ172325
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162278231|gb|FC454570.1|FC454570
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208388632|gb|DC953422.1|DC953422
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67718670|gb|BJ968929.1|BJ968929
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18327583|gb|BJ159586.1|BJ159586
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATACACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208362232|gb|DC939656.1|DC939656
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGGCATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67704547|gb|BJ964780.1|BJ964780
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67719402|gb|BJ969661.1|BJ969661
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCATAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67717180|gb|BJ967439.1|BJ967439
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18375138|gb|BJ206716.1|BJ206716
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162202533|gb|FC380048.1|FC380048
EST:     TTTTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67725699|gb|BJ975958.1|BJ975958
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162278230|gb|FC454569.1|FC454569
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|7287015|gb|AW599502.1|AW599502
EST:     CCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: CCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67572712|gb|BJ945536.1|BJ945536
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67569747|gb|BJ942571.1|BJ942571
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208382639|gb|DC923239.1|DC923239
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162253343|gb|FC429769.1|FC429769
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18362781|gb|BJ194852.1|BJ194852
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|7583152|gb|AW699316.1|AW699316
EST:     CCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: CCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67720482|gb|BJ970741.1|BJ970741
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208347105|gb|DC909375.1|DC909375
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162263668|gb|FC440126.1|FC440126
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|67727691|gb|BJ977950.1|BJ977950
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCATAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162272021|gb|FC448439.1|FC448439
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162263669|gb|FC440127.1|FC440127
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162253342|gb|FC429768.1|FC429768
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208373902|gb|DC940413.1|DC940413
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|162213472|gb|FC389149.1|FC389149
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|18349279|gb|BJ181328.1|BJ181328
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|208392037|gb|DC941885.1|DC941885
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
EST: gi|37831104|gb|BJ589116.1|BJ589116
EST:     TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG                         TATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT
genomic: TTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgg ... tgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtaggtcatgttgacttttttcgtaatgctgatttgttcttctgtaattcagTATCAACGACATGCACCCTAAAGTCAGAAAGATCATGCAGCTGTTGAGGCTGAGACAGATCTTCAACGGCGTGTTCATGAAGGTGAACAAGGCCACCGTA
                             tgctgat  putative branch site (score: 3)
                                   tttgttcttct  CT-rich tract
                actttttt  TA-rich tract