1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatctgggtctttgatgagaagacaactttgcctgctgatagagtgcactcagatttgtcacaataccgcctaactgtaccggctaaactttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGGTCTGGCATGCACGGGATTTCTCAGATGGTGAGCTGAAGGAGGAACTTTT
species | Physcomitrella patens |
transcript | PP1S25_241V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGGEST: gi|100372768|gb|BY948694.1|BY948694
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
EST: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGGEST: gi|162211496|gb|FC387368.1|FC387368
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
EST: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGG TTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
genomic: CCTGCTCATGCGGCAAACCAAGACCCTCAAGATATGCGCTAACCATATGGgtaagtttgc ... ttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGG
gcactcagatttgtcacaataccgcctaactgtaccggctaaactttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGGTCTGGCATGCACGGGATTTCTCAGATGGTGAGCTGAAGGAGGAACTTTT
ctttctctgc CT-rich tract
taaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctgggtctttgatgagaagacaactttgcctgctgatagagtgcactcagatttgtcacaataccgcctaactgtaccggctaaactttctctgcagTTACGGCATCTACTCAATTACAGGAGCACGCTGGCAGTGATAAGTCTTGGGTCTGGCATGCACGGGATTTCTCAGATGGTGAGCTGAAGGAGGAACTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA