Sequence
atgc intronic sequence ATGC exonic sequence...tatgactaatcgagaggtttactctttcttacaaggctgtagaaactcttaagtacatgttattaatagttccattccatgatggctgttctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC
Basic information
species | Physcomitrella patens |
transcript | PP1S25_198V6.7 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S25_198V6.5 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 3'ss of exon 1
tatgactaatcgagaggtttactctttcttacaaggctgtagaaactcttaagtacatgttattaatagttccattccatgatggctgttctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC---
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------------------gtaagcgcttccagcgatctgattcgattcctcttcttgggggactcggggttttgatcc-tgcaaaccttt------gcagTACGAGGA---GGAGAAGATTGGAGAGGGCACGTACGGGGTAGTGTACAAGGCGCGGGACAAGGTCACCAACGAGACGATCGCGCTCAAGAAGATCCGGCTTG
upper sequence: PP1S25_198V6.5 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA15G14390.1 (Glycine max), 3'ss of exon 1
-tatgactaatcgagaggtttactctttcttacaaggctgtagaaactcttaag----tacatgttattaatagttccattccatgatggctgttctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC
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gttcgtagcaccgcaatgcatcatctctctt-cgattttcagtttcctctcaaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCTCTCAAGAAGATTCGCC
upper sequence: PP1S25_198V6.5 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA09G03470.1 (Glycine max), 3'ss of exon 1
-----tatgactaatcgagaggtttactctttcttac-aaggctgtagaaactcttaagtacatgttattaatagttccattccatgatggctgttctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC
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gttcctaccacaattcaatc--ttaacttcatcacattaacattttcttcgattttcactttcctctcacaaactcacttttcctttccattttttttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGCCACCAATGAGACAATCGCTCTGAAGAAGATTCGCC
upper sequence: PP1S25_198V6.5 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ15022 (Selaginella moellendorffii), 3'ss of exon 1
tatgactaatcgagaggtttactctttcttacaaggctgtagaaactcttaagtacatgttattaatagttccattccatgatggctgttctaatg-acagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC
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--------------------gtactgcgaagccgcattcttcgatctctctcgttcttgccgctctgatcttactgttcttgcgcttcttgcggcgcgtagTATGAGAAGGTGGAGAAAATCGGGGAAGGCACATACGGCGTCGTCTACAAGGCCCGGGATCGCATCACAAATGAGACGATTGCGCTCAAGAAGATCCGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162252581|gb|FC428612.1|FC428612EST: CATCAGGCGATTTGGTCTGATCTCGTTACCTCAAGTTTCAAATGGATCAG TATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAG
genomic: CATCAGGCGATTTGGTCTGATCTCGTTACCTCAAGTTTCAAATGGATCAGgtgcgttttg ... ctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttaagtacatgttattaatagttccattccatgatggctgttctaatgacagTATGAGAAAGTGGAGAAGATTGGAGAGGGCACATACGGTGTCGTATACAAGGCCCGGGATCGCCTCACTAATGAAACTATTGCTCTGAAAAAAATACGGC
ttctaat putative branch site (score: 2)
ctgttct CT-rich tract
tacatgttattaata TA-rich tract