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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaatgtgcgctgggtgatcgaattagtggcatgaactgcgtcttcgaggcaagtgggtgggaattcaggttgatggttcccatggttcgacattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCCACAGAGAGCGGATTCCAGAGCGCATTGTGCACGCTCGTGGAGCAGGTGC

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384851|gb|DC907464.1|DC907464
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67718671|gb|BJ968930.1|BJ968930
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208377750|gb|DC940862.1|DC940862
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208391105|gb|DC938135.1|DC938135
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67701644|gb|BJ961877.1|BJ961877
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208374471|gb|DC941200.1|DC941200
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208358178|gb|DC939374.1|DC939374
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67717845|gb|BJ968104.1|BJ968104
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208387137|gb|DC941309.1|DC941309
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208364305|gb|DC935576.1|DC935576
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208364257|gb|DC935528.1|DC935528
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208393656|gb|DC907807.1|DC907807
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67702179|gb|BJ962412.1|BJ962412
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67712527|gb|BJ965976.1|BJ965976
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67702405|gb|BJ962638.1|BJ962638
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208390335|gb|DC929283.1|DC929283
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208372156|gb|DC936934.1|DC936934
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67703701|gb|BJ963934.1|BJ963934
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67704770|gb|BJ965003.1|BJ965003
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67717320|gb|BJ967579.1|BJ967579
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208357002|gb|DC930032.1|DC930032
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGGTCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67702926|gb|BJ963159.1|BJ963159
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208353748|gb|DC938773.1|DC938773
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208370371|gb|DC931783.1|DC931783
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208366720|gb|DC931377.1|DC931377
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208362608|gb|DC931029.1|DC931029
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208353668|gb|DC929711.1|DC929711
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208371487|gb|DC931838.1|DC931838
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208391441|gb|DC937589.1|DC937589
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208374632|gb|DC931971.1|DC931971
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208356923|gb|DC942669.1|DC942669
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67703497|gb|BJ963730.1|BJ963730
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208394247|gb|DC933915.1|DC933915
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208387954|gb|DC932878.1|DC932878
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|18350719|gb|BJ182770.1|BJ182770
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208366660|gb|DC931317.1|DC931317
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67712529|gb|BJ965978.1|BJ965978
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67719593|gb|BJ969852.1|BJ969852
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67709324|gb|BJ965140.1|BJ965140
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTCCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208379536|gb|DC911147.1|DC911147
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208369236|gb|DC936051.1|DC936051
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208367245|gb|DC939817.1|DC939817
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|18346805|gb|BJ178850.1|BJ178850
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208377086|gb|DC936818.1|DC936818
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208358975|gb|DC939231.1|DC939231
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208389713|gb|DC933615.1|DC933615
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208346392|gb|DC905297.1|DC905297
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67717657|gb|BJ967916.1|BJ967916
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208374745|gb|DC932028.1|DC932028
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208377653|gb|DC932189.1|DC932189
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208391256|gb|DC933517.1|DC933517
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67720025|gb|BJ970284.1|BJ970284
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67716758|gb|BJ967018.1|BJ967018
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67718893|gb|BJ969152.1|BJ969152
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208346674|gb|DC913320.1|DC913320
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208367164|gb|DC935964.1|DC935964
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67704136|gb|BJ964369.1|BJ964369
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67704422|gb|BJ964655.1|BJ964655
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTGTGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67716749|gb|BJ967009.1|BJ967009
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208353664|gb|DC929707.1|DC929707
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208393315|gb|DC942455.1|DC942455
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208387871|gb|DC929215.1|DC929215
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208376966|gb|DC936772.1|DC936772
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208394402|gb|DC942562.1|DC942562
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67703535|gb|BJ963768.1|BJ963768
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67719757|gb|BJ970016.1|BJ970016
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208362187|gb|DC935629.1|DC935629
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|18358219|gb|BJ190278.1|BJ190278
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67702150|gb|BJ962383.1|BJ962383
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208383981|gb|DC907372.1|DC907372
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67709790|gb|BJ965606.1|BJ965606
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208390300|gb|DC942037.1|DC942037
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208357017|gb|DC942707.1|DC942707
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208375476|gb|DC940502.1|DC940502
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208372368|gb|DC936484.1|DC936484
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67719949|gb|BJ970208.1|BJ970208
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67717944|gb|BJ968203.1|BJ968203
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|18344805|gb|BJ176846.1|BJ176846
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|67703045|gb|BJ963278.1|BJ963278
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
EST: gi|208389909|gb|DC937740.1|DC937740
EST:     GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG                         GCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC
genomic: GGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 14

TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGGgtaagcaaac ... acattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCCACAGAGAGCGGATTCCAGAGCGCATTGTGCACGCTCGTGGAGCAGGTGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaggcaagtgggtgggaattcaggttgatggttcccatggttcgacattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCCACAGAGAGCGGATTCCAGAGCGCATTGTGCACGCTCGTGGAGCAGGTGC
                       ggttgat  putative branch site (score: 14)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaatgtgcgctgggtgatcgaattagtggcatgaactgcgtcttcgaggcaagtgggtgggaattcaggttgatggttcccatggttcgacattggcagGCCCCGTTCTGTTGGAGGATTATCACTTGGTGGAGAAGATCGCAAACTTCCACAGAGAGCGGATTCCAGAGCGCATTGTGCACGCTCGTGGAGCAGGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG