Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162181753|gb|FC357352.1|FC357352EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|208355066|gb|DC926717.1|DC926717EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGNGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|208364162|gb|DC943418.1|DC943418EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGANCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162181763|gb|FC357362.1|FC357362EST: GCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162181456|gb|FC358070.1|FC358070EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|208382468|gb|DC928002.1|DC928002EST: TGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCNTCCNT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCANTACGTGC
genomic: TGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCC-Tgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGC
EST:
gi|100390406|gb|BY952814.1|BY952814EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|100413051|gb|BY992564.1|BY992564EST: GGCTCTGTACGACATTTGCTTTANGACACTGAAGCTCATTACTCCCTCTT TTGGAGATTTGAAC-ACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162228569|gb|FC404466.1|FC404466EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162250828|gb|FC426872.1|FC426872EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162176333|gb|FC353518.1|FC353518EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|208386892|gb|DC956903.1|DC956903EST: GACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCCT TNGGAGA-TTGNANCCACTTGATCTTTGCGACGATGAGCGGCATTACGTG
genomic: GACATTTGCTTTAGGACACTGAAGCTCATTACTCCCT-CCTgtaagctctt ... ctttgtgcagTTGGAGATTTG-AACCACTTGATCTCTGCGACGATGAGCGGCATTACGTG
EST:
gi|162190322|gb|FC365336.1|FC365336EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|162163453|gb|FC339987.1|FC339987EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCG
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCG
EST:
gi|162156448|gb|FC332680.1|FC332680EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTG
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTG
EST:
gi|162165264|gb|FC340791.1|FC340791EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST:
gi|100446052|gb|CJ970351.1|CJ970351EST: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCT TTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
35 (upstream exon),
25 (downstream exon)
Score:
13GTACATCAGTTAGTAGAAAATGCTGATGAGTGCATGGTGCTGGACAACGAGGCTCTGTACGACATTTGCTTTAGGACACTGAAGCTCATTACTCCCTCCTgtaagctctt ... ctttgtgcagTTGGAGATTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTGCCTGCGTTTCCCCGGACAGCTCAACTCTGACCTGAGAAAGTTGGCGGT
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