1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtggcgatcgttttggtggtcttgcggtcggggagagaggggcgaagacagggttgggagtataggtggagcggggttgtacattgtgagcacattggtgatggttttactgaacgaggggggggggtgtgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGATCTTCGGAAGTTGGCGGT
species | Physcomitrella patens |
transcript | PP1S252_101V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGCTGTACGACATCTGTTTCAGGACTTTGAAGCTGATCACCCCGTCTT TCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTEST: gi|162214728|gb|FC391799.1|FC391799
genomic: GGCGCTGTACGACATCTGTTTCAGGACTTTGAAGCTGATCACCCCGTCTTgtaagtggcg ... tgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST: GGCGCTGTACGACATCTGTTTCAGGACTTTGAAGCTGATCACCCCGTCTT TCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTEST: gi|100414422|gb|BY992767.1|BY992767
genomic: GGCGCTGTACGACATCTGTTTCAGGACTTTGAAGCTGATCACCCCGTCTTgtaagtggcg ... tgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
EST: GCGCTGTACGACATCTGTTTCAGGGACTT-GAAGCTGATCACCCCGTCTT TCGGGGACTTGAACAACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
genomic: GCGCTGTACGACATCTGTTTCAGG-ACTTTGAAGCTGATCACCCCGTCTTgtaagtggcg ... tgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCT
tgtgagcacattggtgatggttttactgaacgaggggggggggtgtgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGATCTTCGGAAGTTGGCGGT
ttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggcgatcgttttggtggtcttgcggtcggggagagaggggcgaagacagggttgggagtataggtggagcggggttgtacattgtgagcacattggtgatggttttactgaacgaggggggggggtgtgttttgcagTCGGGGACTTGAACCACTTGATCTCTGCGACGATGAGCGGCATTACGTGCTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGATCTTCGGAAGTTGGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA