1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgacagcttttccttcatactatggttgtaaatggcataccatttttaggatgttcctgtcgaaggacagttgaattagttggcctgtccgttgcatacacttctgagtgtagttgaagattgatgaaacacctctatgagctaatgaggaaattgctgtgtccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCAGTGAAAAGTCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACC
species | Physcomitrella patens |
transcript | PP1S24_182V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18325719|gb|BJ157716.1|BJ157716
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|208350408|gb|DC906110.1|DC906110
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGGCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18344133|gb|BJ176172.1|BJ176172
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18328604|gb|BJ160609.1|BJ160609
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18362477|gb|BJ194547.1|BJ194547
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18325392|gb|BJ157388.1|BJ157388
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|162256884|gb|FC432986.1|FC432986
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|100405258|gb|BY955435.1|BY955435
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|208352204|gb|DC906307.1|DC906307
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATANATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18331385|gb|BJ163396.1|BJ163396
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCEST: gi|18362890|gb|BJ194962.1|BJ194962
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
EST: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATT TTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
genomic: ACCTTGGTGAGGTTCTTCGAGGCGACCGCATTGAGAATTCTCCTTACATTgtgagtgaca ... tccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTC
aagattgatgaaacacctctatgagctaatgaggaaattgctgtgtccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCAGTGAAAAGTCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACC
agctaat putative branch site (score: 1)
aaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgacagcttttccttcatactatggttgtaaatggcataccatttttaggatgttcctgtcgaaggacagttgaattagttggcctgtccgttgcatacacttctgagtgtagttgaagattgatgaaacacctctatgagctaatgaggaaattgctgtgtccatcacagTTTCAAACGAAAATAGATAAACAATGCCAAATTGTTTGCAAAAAGAAGCTCAGTGAAAAGTCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACC
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