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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagaattttccctgtgtcaaacaccattgcttgaccttggtgactgttgggttctttttgagctgcttattcaagaaatggataatgcattaatgcagGGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAGTCAGTTTCTATGGCTCCTGCGGATCCCATTTTGGGTGTCTCTGAGGCAT

Basic information

species Physcomitrella patens
transcript PP1S245_98V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429506|gb|BY959597.1|BY959597
EST:     GGATTGCCGCTTTTCCTCAGAAGAATGGAAACATTACATTGTGTTCCCAG                         GGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAG
genomic: GGATTGCCGCTTTTCCTCAGAAGAATGGAAACATTACATTGTGTTCCCAGgtgagtggag ... attaatgcagGGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAG
EST: gi|100360663|gb|BY965570.1|BY965570
EST:     GGATTGCCGCTTTTCCTCAGAAGAATGGAAACATTACATTGTGTTCCCAG                         GGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAG
genomic: GGATTGCCGCTTTTCCTCAGAAGAATGGAAACATTACATTGTGTTCCCAGgtgagtggag ... attaatgcagGGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgggttctttttgagctgcttattcaagaaatggataatgcattaatgcagGGGAAGTCAAGAGCGGTAATGTCCGTTGCTACCGATGTGTCTCGATTTGAGTCAGTTTCTATGGCTCCTGCGGATCCCATTTTGGGTGTCTCTGAGGCAT
                                            cattaat  putative branch site (score: 3)
        ttcttttt  TA-rich tract