1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taggagacagtattatattttcatcatttgtttgttactcgtttgataccgtgcattatgaagcaccgcatgctaatactgatttccttttggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG
species | Physcomitrella patens |
transcript | PP1S241_40V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGCGGNGAGGCTCTTTCAGGGGATGGCACCCAAAACATANATCCCAAN GTCACAATGGCAATTGCTCGAEST: gi|100374333|gb|BY985757.1|BY985757
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGA
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCANG GTCACAATGGCAATTGEST: gi|208346332|gb|DC912767.1|DC912767
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTG
EST: TCAGCNNNNNNNCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATANCACGATTGGGTGTGEST: gi|162165351|gb|FC341970.1|FC341970
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|162254003|gb|FC430637.1|FC430637
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|100403657|gb|BY955036.1|BY955036
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|162189095|gb|FC365213.1|FC365213
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|208390678|gb|DC937834.1|DC937834
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATANATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|208365430|gb|DC950897.1|DC950897
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGEST: gi|100373420|gb|BY949317.1|BY949317
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
EST: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAG GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
genomic: TCAGCGGGGAGGCTCTTTCAGGGGATGGCACCCAAAACATAGATCCCAAGgtgcagttct ... tggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTG
ataccgtgcattatgaagcaccgcatgctaatactgatttccttttggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG
tactgat putative branch site (score: 2)
tttcctttt CT-rich tract
attatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggagacagtattatattttcatcatttgtttgttactcgtttgataccgtgcattatgaagcaccgcatgctaatactgatttccttttggtgtgtagGTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcatgc