1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatctattgcttgcgcgttgtctttcatgtttgggaaaagttcacaactgttgagtagcttctcaatcattcagtgcttcttgtagttttagtttgtactcattgccgaggcaatgagtgttggtggatgatcatctttaaactgtaagttgcaattcttctcggataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAGATGCCGACATCAAGAAGGCTTACAGAAAGTTGTCCCTACTTTATCATC
species | Physcomitrella patens |
transcript | PP1S241_31V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|208385127|gb|DC911373.1|DC911373
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18356424|gb|BJ188483.1|BJ188483
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18359827|gb|BJ191888.1|BJ191888
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18344563|gb|BJ176604.1|BJ176604
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18342936|gb|BJ174972.1|BJ174972
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAAEST: gi|67709776|gb|BJ965592.1|BJ965592
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18342741|gb|BJ174776.1|BJ174776
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18363096|gb|BJ195168.1|BJ195168
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18351033|gb|BJ183084.1|BJ183084
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|100422605|gb|BY976457.1|BY976457
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18348897|gb|BJ180946.1|BJ180946
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|162257847|gb|FC434045.1|FC434045
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18346375|gb|BJ178418.1|BJ178418
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18371312|gb|BJ202914.1|BJ202914
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|162169401|gb|FC345757.1|FC345757
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAEST: gi|18350098|gb|BJ182149.1|BJ182149
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
EST: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAG AACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
genomic: GGATAGTCATGGCGTTCCTTGTCTTCTACATCAGGGCTAGCACTCAAGAGgtaatctatt ... gataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACA
gttggtggatgatcatctttaaactgtaagttgcaattcttctcggataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAGATGCCGACATCAAGAAGGCTTACAGAAAGTTGTCCCTACTTTATCATC
atctttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctattgcttgcgcgttgtctttcatgtttgggaaaagttcacaactgttgagtagcttctcaatcattcagtgcttcttgtagttttagtttgtactcattgccgaggcaatgagtgttggtggatgatcatctttaaactgtaagttgcaattcttctcggataatgcagAACCAAGTCTTCGAACCCTTTTCAATTCTTGGTCTACAATCGAGCGCCACAGATGCCGACATCAAGAAGGCTTACAGAAAGTTGTCCCTACTTTATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG