Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA

Basic information

species Physcomitrella patens
transcript PP1S237_14V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
--------cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccatt---gctttacataatttttttggattgggcattgataagtta---cttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
         |  |  |  ||| |||| |  |    |  ||||  ||   || | | |   ||| |   |     |     | |||   ||  | |  |    | |   |   |||| |||||||| || || || |||||  | || || |||||| ||||||| || || || ||||| |||||||| |||||||| ||||||||||||||||
gtttctaataaacttc-tgcatttctttacg----ctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 3
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatcc---attgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                   |||| | | |    | |    || | |    ||| |  |||||  |    |  | |    ||      | |  |    |  ||||| |||||||| || ||  | || ||| | || ||||||||| ||||||| || ||||| |||||||||||||| ||||||||| | || ||||| ||||
------------------gtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgttt-cagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 3
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
  ||     | |   ||| | |    |  |         || ||  |||  |||    |   || ||||  |      |||    ||   |||     |||| |||||||| || ||  | || ||| | || || |||||||| ||||| || ||||| ||||||||||| || ||||| |||||||| || || || |
--gtttttcctctaatct-tataaaaaatatcagttctaaatat--attcatttgagga---ttattggcataactgatgagctttttgcttttgtttagCCTCAAGATGCCTATGGCTTAGAGAAGCTCGCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
---cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcat-tgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
   |  ||| | ||    |||  |||  | |   ||   ||   || ||    |    | |     |  ||  |    ||  |   ||    |||  |  ||||||||||||||| ||||| || || ||| |||||||||||||| ||||||| || ||||  |||||||| ||||| ||||||||||| |  ||||| ||||
gtcctctcggc-cgtgtgtctgcgtgtcgccggctgcttgctg-ca-ccgcgacgccgc-tgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ34003 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataag---ttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                                ||  | |||     |   ||||        ||| ||   ||    ||   ||    ||  ||| || ||||||||||||||| || || || || ||| ||  |||||| ||| ||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| ||||
--------------------------------gtatgtgaaagaagaacccttt-------ctttctgatctgaaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ33664 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataag---ttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                              || |  |  |  |   | | ||||        ||| ||   |||   ||   ||    ||  ||| || ||||||||||||||| || || || || ||| ||  |||||| ||| ||||||| || ||||| ||||| ||||| || |||||||| ||||| ||||| ||||
------------------------------gtatgtgaaagaaagaaatccttt-------ctttctgatctggaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ37510 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataag---ttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                                ||  | ||||    |   ||||        ||| ||   |||   |||  ||    ||  ||| || ||||||||||||||| || || || || ||| ||  |||||| ||| ||||||| || ||||| ||||| ||||| || |||||||| ||||| ||||| ||||
--------------------------------gtatgtgaacgaagaacccttt-------ctttctgatctggaagttgtaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ18599 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                    ||    |  ||        || |   |  | ||  | |   |||| |||       |   | || || |  ||   ||||||||||||||| || || || || ||| ||  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || ||||
--------------------gtatgaaaaagaaaaaaaaaaaaaaaaaaggtt--cttttcttttgtggggaatctaaaaacaaattgcacttt--gcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ36458 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                               ||    |||| |   |  ||||    |  |||    ||| |  | |   | || || |  ||   ||||||||||||||| || || || || ||| ||  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || ||||
----------------------------gtatgaaaacgaaaaaaaaaagcttcttttcttttgcggggaatctgaa--aaaaaattgcacttt--gcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                    ||    |  ||        || |   | | |||  |     |||| |||   ||    ||| ||  |       | ||||||||||||||| || || || || ||| ||  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || ||||
--------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctc-----ttttgtgg---ggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162234810|gb|FC409283.1|FC409283
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCANA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100417121|gb|BY957178.1|BY957178
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTTGAAAAGTTGGCCACCGAGGA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTT-GAAAAGTTGGCCACCGAGGA
EST: gi|162165131|gb|FC341139.1|FC341139
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162216357|gb|FC392150.1|FC392150
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162191865|gb|FC368014.1|FC368014
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162207083|gb|FC382197.1|FC382197
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162184537|gb|FC360011.1|FC360011
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|208365074|gb|DC931124.1|DC931124
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCC-AAGATGCTTACGGTCTTGAAAAGTTGNCCACCGAGGAGTTGTG
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTG
EST: gi|37850522|gb|BJ608530.1|BJ608530
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162242164|gb|FC418416.1|FC418416
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162228992|gb|FC404221.1|FC404221
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162246197|gb|FC423607.1|FC423607
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|18362056|gb|BJ194123.1|BJ194123
EST:     TCGAAACTGATGTGAGCAGTTTGAANGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTG
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTG
EST: gi|37821379|gb|BJ579445.1|BJ579445
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100449002|gb|CJ973301.1|CJ973301
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162263399|gb|FC438622.1|FC438622
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162154656|gb|FC331594.1|FC331594
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCANA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162197191|gb|FC374168.1|FC374168
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162156418|gb|FC332650.1|FC332650
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162223643|gb|FC399741.1|FC399741
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|67718099|gb|BJ968358.1|BJ968358
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162167714|gb|FC344028.1|FC344028
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|7148118|gb|AW510040.1|AW510040
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100453002|gb|CJ975551.1|CJ975551
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGT-GGNCACCGAGGAGTTGTGCAA-
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100392372|gb|BY953330.1|BY953330
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCCAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162161475|gb|FC336836.1|FC336836
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100355970|gb|BY946129.1|BY946129
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAA-
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|67508095|gb|BJ940966.1|BJ940966
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162175896|gb|FC351574.1|FC351574
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162258586|gb|FC434801.1|FC434801
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162186150|gb|FC361354.1|FC361354
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162247781|gb|FC423400.1|FC423400
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|18328178|gb|BJ160182.1|BJ160182
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162278010|gb|FC454141.1|FC454141
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100442277|gb|BY981301.1|BY981301
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCA-GATGCTTACGGTCTTGAAAAGTTG
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTG
EST: gi|100385036|gb|BY987499.1|BY987499
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162272922|gb|FC448858.1|FC448858
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162215665|gb|FC391705.1|FC391705
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|208344946|gb|DC909057.1|DC909057
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAA-GTNGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162190218|gb|FC366376.1|FC366376
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100448137|gb|CJ972436.1|CJ972436
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162189547|gb|FC365769.1|FC365769
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100387348|gb|BY970492.1|BY970492
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCG
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCG
EST: gi|162190271|gb|FC366429.1|FC366429
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100357311|gb|BY983798.1|BY983798
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGNCAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTG-CAA
EST: gi|162201901|gb|FC376899.1|FC376899
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162208740|gb|FC384876.1|FC384876
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100405703|gb|BY973810.1|BY973810
EST:     CGAAACTGATGTGAGCATTTTGAGGGAGTCTGATGCGTGGGCCCGCTCTG                         CCCCAGGATGCTTACGGTCTTGAAAAGTTGG
genomic: CGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGG-CCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGG
EST: gi|100430241|gb|BY959770.1|BY959770
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100441639|gb|BY962730.1|BY962730
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCA-GATGCTTACGGTCTTGGAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162161530|gb|FC338737.1|FC338737
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100392448|gb|BY953368.1|BY953368
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTTGAAA-GTTGGCCACCGAGGAGTTGTGCAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTT-GAAAAGTTGGCCACCGAGGAGTTGTGCAA
EST: gi|162187337|gb|FC363495.1|FC363495
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|19788591|gb|BQ040802.1|BQ040802
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100364875|gb|BY947952.1|BY947952
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCNAGATGCTTACGGTCTTGAAAAGTTG-CCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162192021|gb|FC367234.1|FC367234
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162153911|gb|FC329418.1|FC329418
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162245933|gb|FC419677.1|FC419677
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162157309|gb|FC333138.1|FC333138
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|162154977|gb|FC331395.1|FC331395
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
EST: gi|100450220|gb|CJ974154.1|CJ974154
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAA
EST: gi|100368393|gb|BY966988.1|BY966988
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCCAGATGCTTACGGTCTTGAAAAAGT-G-CCACCGAGGAGGTGTGCAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAA-GTTGGCCACCGAGGAGTTGTGCAA
EST: gi|67717546|gb|BJ967805.1|BJ967805
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTG
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTG
EST: gi|162178109|gb|FC354411.1|FC354411
EST:     TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG                         CCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA
genomic: TCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 46

GTTTTTCTATGCCTCAAGCGCGTGCATTTACCCTGAATTCAAGCAACTCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttc ... tttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA
                              cattgat  putative branch site (score: 46)
                                        ttacttttct  putative PPT
      tttacataattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcattgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA