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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagctggtccggtacttgcaattatcgggttcagtgacatcacctttttctcaatactgtgattaaatgagagtgaggttgtttttgttggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCACTTGCCTTGGCGAAGCATCCCGTTGTGAATGCCTGCTGTAAGGACGGAA

Basic information

species Physcomitrella patens
transcript PP1S223_50V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S223_50V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA10G35960.1 (Glycine max), 3'ss of exon 2
attagctggtccggtacttgcaattatcgggttcagtgacatcacctttttctcaatactgtgattaaatgag-agtga--ggttgt-ttttgttggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCACTTGCCTTGGCGAAGCATCCCGTTGTGAATGCCTGCTGTAAGGACGGAA
   || |  ||      || | || |     ||      |  |   ||  |  | | ||||| | || |||   | |||  | || | |||| |   || |||||||||||| ||||| || |||||||| ||| | ||||||||||||  |||||||||  |||  || || || ||| ||||  |  | ||||  || || |
--cagtttttcaaacgatttctatgagtaccttggacttc--cggattcatacccaaactgttaatatatgtctattgattgattctattttataaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155717|gb|FC331330.1|FC331330
EST:     GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG                         ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: gi|162180018|gb|FC356089.1|FC356089
EST:     GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG                         ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: gi|208365828|gb|DC951063.1|DC951063
EST:     GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG                         ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: gi|208365900|gb|DC951079.1|DC951079
EST:     GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG                         ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
EST: gi|162178403|gb|FC354127.1|FC354127
EST:     GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAG                         ATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA
genomic: GTGTCGGTTACACTGTCACCACTGATGCGTTGGACGCCCTCTACAAGAAGgtatgtgtat ... tggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttctcaatactgtgattaaatgagagtgaggttgtttttgttggatatcagATCAAGTCGAAGGGCGTGACAATGACTGCACTTCTTGCTAAGGCTTGTGCACTTGCCTTGGCGAAGCATCCCGTTGTGAATGCCTGCTGTAAGGACGGAA
                                      tttttgtt  CT-rich tract
                tgattaaat  TA-rich tract