ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG

Basic information

species	Physcomitrella patens
transcript	PP1S223_12V6.2
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os08g02300.1 (Oryza sativa), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaat-catgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                     ||      ||| |||  ||||  |      | ||      | |   |  |  ||  |     ||   ||   || ||  |       | |  ||     | | ||  | |  ||   | |   |   |  | |||  ||||  ||      | |      |      ||   |  |||   | |  ||| | ||| |  ||||| ||||| | |||||||||||||||||||||||| |   |  | ||| |         
-------------------gtagctaagctagtattcctcatcatataacctttctcc---tctccaattctcaattt----ctagctaccaaatcgatgatggatttatc-aat----caatcgag-ctaagctagctaagtaatggtgtgtgtgcaaaatatatattgtggttgcagAGAGGTGTAAGATTGGGTCA---GGGCCGCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACAGGGCGACGGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os06g01480.1 (Oryza sativa), 3'ss of exon 3

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgca-acagATCTTTGCAAAATCCAGGCCGACTCAAA---TGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG
                                                    |||| ||   |  | ||   | || ||     | | |   ||| ||     |||  |   | |||| || || |  |   | |  || | ||       ||| ||  || ||||||  |||| | ||||   ||| | | ||  ||       ||| |||| | ||| |  ||||| ||||| | |||||||||||||||||||||||| |   |  ||||   
----------------------------------------------------gtcagta--ctcagtac--agtacgtacatgcatgcatatgatagatgtgtacaatattcg-tgtgctaattaagccagcaata-attaact-------gggagtataaccatgcatgcagAGCGTTGCCGGATCAATGGCGGGTCGGCGGCGGAGGAGCAGAACGAATGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACCAA---

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os06g04090.1 (Oryza sativa), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgca-acagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                        | || ||   ||||| ||        | | |   | |   |||  ||| ||||||   ||  ||       |       | ||||   ||||| || ||| ||      |    |  |   |  |||   | |  ||||| ||| |  ||||| ||||| | |||||||||||||||||||||||| |   |  | |||||         
------------------------------------------------------------------------gtacgtaa--ttaagcaca----cacacatcgatcaattcgat-cgatttttgac---atgttttgatcaatgtggcatgtgtgt---atcatacatacatatgcagAGAGGTGCAGGATTGGGTCA---GGGCCGCAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCAACGGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os06g33940.1 (Oryza sativa), 3'ss of exon 2

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacc-tgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                      | |  ||||       ||||  ||  |  | |    |  ||||     |  | |   |   || ||  | ||  |||  |     |  | |  | || |  | |   | | |||  ||| || || ||   |||||||  ||||  ||   | | |   |          || | ||| |  ||||| ||||| | |||||||||||||||||||||||| |   |  | |||||         
-------------------------------------gtaaaattgaaattgagcaatcaatcagtcagctc--atctagctagccggccggagctagcaagcatgcaacagtgagatttagctgaagtttaaacatggtgattaatatttcatgtggtatat-at---acagATCGGTGCAGGATAGGGACGGGGCCT---------CAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCGACGAC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os02g15340.1 (Oryza sativa), 3'ss of exon 2

gtatgca-acaattcatttcagagtattcg--tagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaag----aactggattgaaaaccacaccacctgatgtgatatttgactccat-acttcatcacctaaaattcgggtg-ttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
||||  | |||  |  || |  | || |    ||||| || |    ||     |||  || | | ||   |      |  | |  ||       || |   || | ||   ||||    ||| | | |||| |||  || | |  ||    ||| ||     || ||  ||  ||   ||||||  ||||  ||   | | |   |  | ||| ||            ||||| ||||| | |||||||||||||||||||||||| |   |  |||||||         
gtataaacacatatgcttgctaattaattaactagcacttct----ttagaaaatg--aacaaacttacaaatgtatatgttgtgttggtgcttaatttttttcacaaaatcacctaacgattttaaatttaactttatgaatatattgattaacatatatatggttgcat--tgatgcagATCGATGCAGGATTGGGACGGGGGCGCAGGAGGAGTGG---------TACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACCAACCGCGCCACGGT

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                 | |    | |   |    |   |  ||     | || || |  |    | || |  ||||       | || | || | || ||         ||||  ||||    |    ||||| ||   |||       |  ||  | || |  || |  ||||| ||||| | ||| ||||| |||||||||||||||| |||| |||||||         
-----------------------------------------------------------------gtaattagcatgca----tgcaagttgatcgaagaatcaaaaaaatcaaagttaggtttgcgattgaa-ttgagcatccaacatgta-----caaatattgcagAGAAG---TGCAAGATT--GGC-------ATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G315140_T01 (Zea mays), 3'ss of exon 2

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatg--tcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATG-AGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                  ||    ||   || ||||    | |      | ||   |||| || |||| |    | | | |     |     || ||  | |  |   |  | | ||   ||||| ||||| | |    || | |   ||||  ||  | | | ||||||   |   |  ||| |     |   || |   ||| || |||| | |||||  ||||| ||||| | ||||||||||||||||||||||||||  ||| |||||||         
-----------------gcaagaaataaata-cattccgaaagcaagtagttgatgcaatggagttggta----gtagacaattaca-----tgcatatatacacgtgctgc-taattaaatattagactc-aca----atgatc---aatt--ggcatcaca-catgcatttggaatgggcagAGAAGTGCAAGATTGGGATGGAGGAGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACTCGCACCAACCGGGCGACCAC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G354151_T01 (Zea mays), 3'ss of exon 3

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgca-acagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                                   |||||| |  ||| |     | || |    || | |||  |   |   | || | | |    | |   |  | ||  |    |||  ||||    ||||| |||  | | ||         | |||| | ||| |  ||||| ||||| | |||||||||||||||||||||||||| |||| | |||||         
----------------------------------------------------------------------------------gtaagaagtacattaattctgaaacaagtatatat-atacatacatagctgctgc-taaatagacacatgcattttggaatgggcatgcagAGAAGTGCAAGATCGGGACGGA---------GGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACCCGCACAAACCGGGCGACCAC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G440219_T01 (Zea mays), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG
                                                        | | || |  ||    ||||  || |   |   ||  ||     ||       |    | || ||| | ||  | | || |  ||| |  |  |    | |||  | ||  | ||||    |||| | |    | |       | ||| |||| | ||| |  ||||| ||||| | |||||||||||||||||||||||||| |||  |||||||
--------------------------------------------------------acaaatattcga----gaacggagacactactgctatat-----acattctttcagagtatggtatatcacatcctcctacgacacatgcacat----tatta--ttat-tagcagACAAGTGCAGACTGGGAGGCCCTGGTGAGGAGGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACCCGGACCAACCG

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G069047_T01 (Zea mays), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggt-gttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAA--TGAGAAG------CAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
   | |   | | | |  ||   ||| | |  ||| |   | ||    | |   ||  || |   |  |   | |      |  |     ||   |||    ||   |||  ||      |  |||    ||  |    |  | |     | | |  |        |  |  |||  |      || |||   ||  |||    | |  |      || | ||| |  ||||| ||||| | |||||||||||||||||||||||| |  ||| |||||||         
--gtacggta-tacttaccaccatataccttccatctccgaggtccgagcaaagcatcagctcgtgatcataggatcggatcggagctggtgacctgatggtcatgtcacacgagcatgaacgtgagctgatcatcgtacgtccatggcgctgatcatcggggttagttatcgattctgcgtgcatgcagAGAGATGCAAGATCGGGTCGGGTCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCTACGGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G041746_T01 (Zea mays), 3'ss of exon 2

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtca---atagatttg--------ggacccggaaca---tagccttaaga--actggattga-aaaccacaccacctgatgtgatatttgactccatacttcat-cacctaaaattcgg-gtgt-taaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
||| | || ||| ||| |     | |   |  ||||||   ||   |  | |  ||   ||| | |||          ||| | | |    |||   | |     || | | |  | |||  |  |  |  | ||  | |  |    |||  |||  ||  |||  ||     | | |  | ||||||    ||    | ||  | ||||        |  | | | || | ||| |  ||||| ||||| | |||||||||||||||||||||||| |   |  | |||||         
gtaagtaa-aatacatgt----atgtatatgtcattttgtgtgcaaacagctagcaaacatatacttgttatatatatacctgcagcgagctagatctgatgttgctagctagctagacctaattaatttttttgcaaatcaaagagataactcacacaaataatcttttatatatgtggaacatgca-tgcatggcagAAAGGTGCAGGATAGGC--ACCGGGCATCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGAACAAGGACGAACCGCGCCACGAC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccgga-acatagccttaagaac-tggattgaaaaccacaccacctga-tgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                            |||| | |    | | ||          |     |||    | | | ||||  |  |  |  | || ||  |   |    ||  | |  ||   |    || | ||||  |   |       || | | |  |  | |  |  || |||      ||   ||    ||  ||          || | ||| |  ||||| ||||| | |||||||||||||||||||||||| |  ||| |||||||         
----------------------------gtagtact----acgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccga-tgcatatatggccg------atcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCC---CAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G092465_T03 (Zea mays), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                     ||||  |   | | |  |    |   ||  |||  |||||  | | |||  |  |  ||  |        |  ||||||  | |||  | |  || ||| | |   |   |||||| |               | || ||  ||          || | ||| |  ||||| ||||| | |||||||||||||||||||||||| |  ||| |||||||         
----------------------------------------------------atcaaacgcgatcgaattcatcgc---gcgctaactactgg-ctaacaactgctactactactaaagccgctagctccat--tccat-gcatggaaatcgcgcgcagAGAAATGCAAGA--------------TCGGGTCGGGTCCC--------CAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACGGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv18s0072g01060.t01 (Vitis vinifera), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcat--gcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                 | ||     |  |     ||  || ||||    ||||  |      | | |    |||  | |  |   ||  | | |  | ||  || | ||   ||||  | |||||||   |||||   |  |||        ||||  |||| |  || |  ||||||||||||| ||| ||||||||||| |||||||| | |||  | ||  |         
-----------------------------------------------------------------gtactaattagttcaatatacaaa-tggaaaagaaacatcgtagatttaagaagaatt--aatagagcttttgttaacatagatgtggtt-ttggttcatttgtaacagATAGATGCAAG--CTGGGCT-------ATGATGAGCAGAATGAGTGGTACTTTTTCAGTCACAAAGACAAGAAGTATCCGACGGGAACCCGGACAAATAGAGCTACTGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ22020 (Selaginella moellendorffii), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttc-atcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                                                | |  | |  |  |   || |   || ||| | || ||  |   |||||        | | ||  ||  ||   ||||    || || |||      |  |||  |||    |||||||| |  ||||||||||||| ||||||||||||||| || ||||| |  ||| ||||| |         
------------------------------------------------------------------------------------------------gtagtctagtctcctccatttcg-atatgattgcacaccactgacacctctttcattgttcttcgattttg--gcagAGAAGTGTAAGATC------GGATCAGCTGAA---CAAACCGAATGGTACTTTTTCAGTCACAAGGACAAGAAGTATCCCACGGGAACTCGCACCAACAGAGCCACCGC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ30650 (Selaginella moellendorffii), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                                                        |||   ||       |  |  |   |||  ||      |        |  | |    |  ||  |||||    || |  ||   |  |  |          |||||||||| |  ||||||||||| | |||||||||||||||||| || || |  ||  ||||| |         
---------------------------------------------------------------------------------------------------gtaggcactcgcttccaccttgctcaaaaacatcttttgctggcccctggctgaatctctcctgttgtcacagAGAAATGTAGGATT-GGATCAGC--------AGAGCAAACCGAGTGGTACTTTTTCAGCCACAAGGACAAGAAGTACCCCACAGGAACACGAACCAACAGAGCAACCAC

upper sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ18283 (Selaginella moellendorffii), 3'ss of exon 1

gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccggaacatagccttaagaactggattgaaaaccacaccacctgatgtgatatttgactccatacttc-atcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
                                                                                                | |  | |  |  |   || |   |  ||| | || ||  |   |||||        | | ||  ||  ||   ||||    || || |||      |  |||  |||    |||||||| |  ||||||||||||| ||||||||||||||| || ||||| |  ||| ||||| |         
------------------------------------------------------------------------------------------------gtagtctagtctcctccatttcg-acatgattacacaccactgacacctctttcattgttcttcgattttg--gcagAGAAGTGTAAGATC------GGATCAGCTGAA---CAAACCGAATGGTACTTTTTCAGTCACAAGGACAAGAAGTATCCCACGGGAACTCGCACCAACAGAGCCACCGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|18367000|gb|BJ199080.1|BJ199080

EST:     CCTTATCCGCGACCTGGACCTGTACAAGCTAGAGCCATGGGATCTTCAAG                         ATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACT
genomic: CCTTATCCGCGACCTGGACCTGTACAAGCTAGAGCCATGGGATCTTCAAGgtatgcaaca ... catgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACT

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

gatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG

                       acctaaa  putative branch site (score: 3)
                                       ttaaatcat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns