1 5' 3' | 2 5' 3' | 3 5' 3' |
...taattcttacgttctgcacagaaagtgtgtgtacagctactttgtggtggaaagaagtatttttttcttactaacttagattttgggcgcgttcttgcagCTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGGCTACCAGTACTGATTATATAATTTCACTCAATCAAGAAAATATGTCTAG
species | Physcomitrella patens |
transcript | PP1S222_25V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCT CTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGGEST: gi|18354092|gb|BJ186147.1|BJ186147
genomic: GCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCTgtgagttttc ... gttcttgcagCTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGG
EST: GCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCT CTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGG
genomic: GCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCTgtgagttttc ... gttcttgcagCTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGG
ggtggaaagaagtatttttttcttactaacttagattttgggcgcgttcttgcagCTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGGCTACCAGTACTGATTATATAATTTCACTCAATCAAGAAAATATGTCTAG
tactaac putative branch site (score: 0)
cgttctt putative PPT
tatttttttcttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattcttacgttctgcacagaaagtgtgtgtacagctactttgtggtggaaagaagtatttttttcttactaacttagattttgggcgcgttcttgcagCTCTTGTGGAAAATGGAAAATTTCTACTAGCGGCTCGAAAGTTTCGAAGGGCTACCAGTACTGATTATATAATTTCACTCAATCAAGAAAATATGTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -ttctgca