1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggtttgtcttttaacatatttgtttgcgcattctgagcataaggatttggcccaattccggtcttgattcgtttgtcttgtttgttggaaagtttgttctaatgacgacgatattcaatcctcgcagTTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTCATCAGGAAG
species | Physcomitrella patens |
transcript | PP1S21_311V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTCGCTTACGAAGCAGAGTAGATCGTAGGTTTACCATGGGAGAACCAG TTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTCEST: gi|67695365|gb|BJ955598.1|BJ955598
genomic: GACTCGCTTACGAAGCAGAGTAGATCGTAGGTTTACCATGGGAGAACCAGgtgggtttgt ... atcctcgcagTTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTC
EST: GACTCGCTTACGAAGCAGAGTAGATCGTAGGTTTACCATGGGAGAACCAG TTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTC
genomic: GACTCGCTTACGAAGCAGAGTAGATCGTAGGTTTACCATGGGAGAACCAGgtgggtttgt ... atcctcgcagTTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTC
ttgtcttgtttgttggaaagtttgttctaatgacgacgatattcaatcctcgcagTTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTCATCAGGAAG
ttctaat putative branch site (score: 2)
tcctcgc putative PPT
atattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtttgtcttttaacatatttgtttgcgcattctgagcataaggatttggcccaattccggtcttgattcgtttgtcttgtttgttggaaagtttgttctaatgacgacgatattcaatcctcgcagTTGAAAATACGAGAGATACGCATGTCGTGGTTCCTCCCCACATTCCAGCTCATCAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA