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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaattcatgcactgcagagaaaacatcatctcagtgagtaaaaatagtagtgtctgtaacatagagcatactaagacacagttacttttcttctccagGGCTGGGTTTTTGTACTTAGTTTACTAGGAATGGCTCCCTTGGCTGAGCGACTGGGCTTTGTCACCGA

Basic information

species Physcomitrella patens
transcript PP1S21_141V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390478|gb|BY952886.1|BY952886
EST:     TGCTATGCGTTCCAATGGCGTTAATCGGTGGCCAAGGGCTGTTCGGACAT                         GGCTGGGTTTTTGTACTTAGTTTACTAGGAATGGCTCCCTTGGCTGAGCGA
genomic: TGCTATGCGTTCCAATGGCGTTAATCGGTGGCCAAGGGCTGTTCGGACATgtaagcccaa ... tcttctccagGGCTGGGTTTTTGTACTTAGTTTACTAGGAATGGCTCCCTTGGCTGAGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtagtgtctgtaacatagagcatactaagacacagttacttttcttctccagGGCTGGGTTTTTGTACTTAGTTTACTAGGAATGGCTCCCTTGGCTGAGCGACTGGGCTTTGTCACCGA
          ctgtaac  putative branch site (score: 3)
                                      ttacttttcttctcc  putative PPT
                                      ttactttt  TA-rich tract