ERISdb: a Database of Plant Splice Sites

General
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

...gaagcgaatgtaatgaatatatgttaaattgtttcttcgttggtacaattatttatgtggcatgacactgcttaattgtctctaatgctttgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCACTCCGCCCCGTTGTGCACTCTCAGACGTTGAGGTACAATGCCAAGATCCG

Basic information

species	Physcomitrella patens
transcript	PP1S21_106V6.1
intron #	2
splice site	3'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|18357023|gb|BJ189082.1|BJ189082

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208397822|gb|DC916157.1|DC916157

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18345554|gb|BJ177597.1|BJ177597

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67718316|gb|BJ968575.1|BJ968575

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67726726|gb|BJ976985.1|BJ976985

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|6102435|gb|AW126905.1|AW126905

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CACGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67719256|gb|BJ969515.1|BJ969515

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208399919|gb|DC904973.1|DC904973

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18367825|gb|BJ199908.1|BJ199908

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|19790040|gb|BQ041663.1|BQ041663

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67702544|gb|BJ962777.1|BJ962777

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67710010|gb|BJ965817.1|BJ965817

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162244824|gb|FC420176.1|FC420176

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18345907|gb|BJ177950.1|BJ177950

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18345979|gb|BJ178022.1|BJ178022

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162222991|gb|FC399934.1|FC399934

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67720404|gb|BJ970663.1|BJ970663

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208356323|gb|DC957357.1|DC957357

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67716621|gb|BJ966881.1|BJ966881

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162244825|gb|FC420177.1|FC420177

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162210890|gb|FC386988.1|FC386988

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18358075|gb|BJ190134.1|BJ190134

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|6102215|gb|AW126685.1|AW126685

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67724080|gb|BJ974339.1|BJ974339

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67726808|gb|BJ977067.1|BJ977067

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67701904|gb|BJ962137.1|BJ962137

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18352135|gb|BJ184189.1|BJ184189

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37836391|gb|BJ594399.1|BJ594399

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162212095|gb|FC388205.1|FC388205

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37825093|gb|BJ583159.1|BJ583159

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67703758|gb|BJ963991.1|BJ963991

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162207356|gb|FC383913.1|FC383913

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67712796|gb|BJ966245.1|BJ966245

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162210889|gb|FC386987.1|FC386987

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67718238|gb|BJ968497.1|BJ968497

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67577971|gb|BJ950138.1|BJ950138

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67720392|gb|BJ970651.1|BJ970651

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18374249|gb|BJ205827.1|BJ205827

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37830911|gb|BJ588923.1|BJ588923

EST:     GCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: GCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67709760|gb|BJ965576.1|BJ965576

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67571334|gb|BJ944158.1|BJ944158

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37846760|gb|BJ604768.1|BJ604768

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18357231|gb|BJ189290.1|BJ189290

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162212094|gb|FC388204.1|FC388204

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162207357|gb|FC383914.1|FC383914

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67725141|gb|BJ975400.1|BJ975400

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208386414|gb|DC937081.1|DC937081

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|19780298|gb|BQ039543.1|BQ039543

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208357736|gb|DC902288.1|DC902288

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162222992|gb|FC399935.1|FC399935

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162242012|gb|FC415784.1|FC415784

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18351568|gb|BJ183620.1|BJ183620

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67727557|gb|BJ977816.1|BJ977816

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37836600|gb|BJ594608.1|BJ594608

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|208378243|gb|DC918864.1|DC918864

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37844810|gb|BJ602818.1|BJ602818

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162265262|gb|FC440185.1|FC440185

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162212150|gb|FC388260.1|FC388260

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37831823|gb|BJ589835.1|BJ589835

EST:     GTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: GTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162271728|gb|FC448653.1|FC448653

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162271729|gb|FC448654.1|FC448654

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|18366384|gb|BJ198463.1|BJ198463

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67724507|gb|BJ974766.1|BJ974766

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162265263|gb|FC440186.1|FC440186

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37848367|gb|BJ606375.1|BJ606375

EST:     GTGAGGACTTGGTTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: GTGAGGACTTGG-TTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67507833|gb|BJ940710.1|BJ940710

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67694654|gb|BJ954887.1|BJ954887

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|67701915|gb|BJ962148.1|BJ962148

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|162212149|gb|FC388259.1|FC388259

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACCGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

EST: gi|37824670|gb|BJ582736.1|BJ582736

EST:     TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGG                         CGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC
genomic: TGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 80

CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta ... tgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCACTCCGCCCCGTTGTGCACTCTCAGACGTTGAGGTACAATGCCAAGATCCG

<

<

<

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

caattatttatgtggcatgacactgcttaattgtctctaatgctttgcttatcagCGCGCCAGAAGAAGGCTGCGGCTGTTTTCCCACGCCCTACTGCTGGTCCACTCCGCCCCGTTGTGCACTCTCAGACGTTGAGGTACAATGCCAAGATCCG

                                  ctctaat  putative branch site (score: 80)
                                          ctttgctt  CT-rich tract
     atttatgt  TA-rich tract

Data associated with selected splice site

Sequence

Basic information

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data