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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccaccacattgtgaagtccttgtaccattatattggaagctaataattgatgagagggtataatagggcatgattacggcatctacataagccttcattttatgaacttgactggtttgaatgtttgccgaaggaacctcatgtgggcactttcgtcatttcagGTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATCTACAGAGACACTGGCCTTGTCGGTATCCATGCTACTTCTTCTGGTGACT

Basic information

species Physcomitrella patens
transcript PP1S219_95V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162240374|gb|FC419307.1|FC419307
EST:     AGGGAATGTTCTCTCGACTGTACACGCGG                         GTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATC
genomic: AGGGAATGTTCTCTCGACTGTACACGCGGgtaagatcca ... gtcatttcagGTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATC
EST: gi|162257701|gb|FC433628.1|FC433628
EST:     TCTCTGCTGGTGGTCCTGGAAAGGGAATGTTCTCTCGACTGTACACGCGG                         GTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATC
genomic: TCTCTGCTGGTGGTCCTGGAAAGGGAATGTTCTCTCGACTGTACACGCGGgtaagatcca ... gtcatttcagGTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactggtttgaatgtttgccgaaggaacctcatgtgggcactttcgtcatttcagGTTCTGAACAGGCGGGAACAGGTGCATTCTTGCACAGCCTTTAATAGTATCTACAGAGACACTGGCCTTGTCGGTATCCATGCTACTTCTTCTGGTGACT
 acttgac  putative branch site (score: 4)
                                        ctttcgtc  putative PPT
      tttgaat  TA-rich tract