Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtattttctacatttgttcattgtaatgaatcaattccccattcatttatttttcactttctactccagtcctttattgatggtaatggctgtgttcggattagactccccgtagcctttgtgtcctcacactcgtatgaaattttatttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCTGTCTGCGTTTTCCCGGCCAGCTGAACTCTGACCTGCGGAAATTGGCGGT

Basic information

species Physcomitrella patens
transcript PP1S218_7V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162208079|gb|FC384248.1|FC384248
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATC
EST: gi|208366848|gb|DC940162.1|DC940162
EST:     GGCTCTCTATGATATT-GTTTCCGGACTTTGAAATTGATCACTCCTNCGT                         TCGGTGAC-TGAATCAC-TGATCTC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTC
EST: gi|100407443|gb|BY991704.1|BY991704
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100411705|gb|BY992300.1|BY992300
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATNAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100399001|gb|BY990623.1|BY990623
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100362542|gb|BY947406.1|BY947406
EST:     GCTCTCTATGATATTTGTTTCCGGGACTTTGAA-TTGATCACTCCTTCGT                         TCGGTGACCTGAATCNAC-TGATCTCCGCGACGATGAGCGGTATTACTTGC
genomic: GCTCTCTATGATATTTGTTTCCGG-ACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATC-ACCTGATCTCCGCGACGATGAGCGGTATTACTTGC
EST: gi|208392644|gb|DC938581.1|DC938581
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTNGAA-TTGATCACTCCTNCNT                         TCGGTGAC-TGA-TCACCTGATCTCC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCC
EST: gi|100407737|gb|BY991830.1|BY991830
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCAACTGATCTCCGCGACGATAAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|162179409|gb|FC355409.1|FC355409
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTAT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTAT
EST: gi|100396877|gb|BY953872.1|BY953872
EST:     GCTCTCTATGATATTTGTTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTTGACCTGAATCACCTGATCTCCGCG
genomic: GCTCTCTATGATATTTGTTT-CCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGT-GACCTGAATCACCTGATCTCCGCG
EST: gi|100356198|gb|BY946244.1|BY946244
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAAATGATCACTCCTTCGG                         TCGGGGGACCTGAAACCAC-TGATCTCCGCGACGATGAGCGGTATTACTTG
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTG-ACCTGAATC-ACCTGATCTCCGCGACGATGAGCGGTATTACTTG
EST: gi|162228150|gb|FC405927.1|FC405927
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|162247838|gb|FC423418.1|FC423418
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100373274|gb|BY949280.1|BY949280
EST:     GGCTCTCTATGATATTTGTTTCGGGACTT-GAAATTGATCACTCCTTCGT                         TCGGTGACCTGAAATCAC-TGATCTCCGCGACGATGAGCGGTATTACTTGC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAA-TCACCTGATCTCCGCGACGATGAGCGGTATTACTTGC
EST: gi|100394963|gb|BY990012.1|BY990012
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100400077|gb|BY990767.1|BY990767
EST:     GCTCTCTATGATATTTGTT-CCGGGACTTTGAGATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GCTCTCTATGATATTTGTTTCCGG-ACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100416837|gb|BY993114.1|BY993114
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACTTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100406042|gb|BY991510.1|BY991510
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100397505|gb|BY990260.1|BY990260
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAA-TTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100379568|gb|BY949834.1|BY949834
EST:     CTCTCTATGATATTTGTTTCCGGACTTTTGAA-TTGATCACTCCCTTCGT                         -CGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGC
genomic: CTCTCTATGATATTTGTTTCCGGACTTT-GAAATTGATCACTCC-TTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGC
EST: gi|100420637|gb|BY993440.1|BY993440
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTG
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTG
EST: gi|208354181|gb|DC902437.1|DC902437
EST:     GGCTCTCTATGATATT-GTTTCCGAACTT-GAA-TTGATCACTCCTNCNT                         TCGGTGAC-TGAATCAC-TGATC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATC
EST: gi|208373372|gb|DC956476.1|DC956476
EST:     TGATATTTGTTTCCGGAC-TTGAAANTGATCACTCCTTCGT                         TCGGTGACCTGNATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: TGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100400214|gb|BY990836.1|BY990836
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAAATGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|162149683|gb|FC326734.1|FC326734
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100388395|gb|BY951997.1|BY951997
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTCCGT                         TCGGGGACCGGAATCACCTGACCTCCGCAA-GAATAAGGGGTTTTACTTGG
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGA-TGAGCGGTATTACTTGC
EST: gi|208366650|gb|DC931307.1|DC931307
EST:     GGCTCTCTATGATATTTGTTTCCGAACTTTGAA-TNGATCACTCCTTCGT                         TCGGTGAC-TGANTCAC-TGATCTC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTC
EST: gi|100383440|gb|BY950224.1|BY950224
EST:     CTCTCTATGATATTTGTTTCCGGACTTTNGAA-TTGATCACTCCTTCCGT                         -CGGTGACCTGAATCACCTGATCTCC
genomic: CTCTCTATGATATTTGTTTCCGGACTTT-GAAATTGATCACTCCTTC-GTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCC
EST: gi|208363750|gb|DC931074.1|DC931074
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGNGACCTGAATCAC-TGATCTC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTC
EST: gi|100390710|gb|BY971465.1|BY971465
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAA-TTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100396281|gb|BY990052.1|BY990052
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100366897|gb|BY948265.1|BY948265
EST:     GCTCTCTATGATATTTTGTT-CCGGACTTTGAAAT-GATCACTCCTTCGT                         TCGGTGACCTGAAATCAC-TGATCT
genomic: GCTCTCTATGATATTT-GTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAA-TCACCTGATCT
EST: gi|100353043|gb|BY945578.1|BY945578
EST:     CTCTCTATGATATT-GTTTCCGGACTTTTGAA-TTGATCACTCCTTTCGT                         -CGGTGACCTGAATCACCTGATCTCCGCG
genomic: CTCTCTATGATATTTGTTTCCGGACTTT-GAAATTGATCACTCCTT-CGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCG
EST: gi|208368780|gb|DC951346.1|DC951346
EST:     TGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: TGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|162153399|gb|FC329909.1|FC329909
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|208394177|gb|DC929664.1|DC929664
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTNCNT                         TCGGTGAC-TGAATCAC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCAC
EST: gi|100400583|gb|BY954548.1|BY954548
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATGGATCACTCCTTCGT                         CCGGGGACCTG
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTG
EST: gi|100405032|gb|BY991405.1|BY991405
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAAT-GATCACTCCTTCGG                         TCGGTGACCTGAATCACCTGATCTCCG
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCG
EST: gi|7067025|gb|AW496880.1|AW496880
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|208399661|gb|DC908842.1|DC908842
EST:     GGCTCTCTATGATATT-GTTTCCGGACTT-GAA-TTGATCACTCCTTCGT                         TCGGTGACTTGAATCAC-TGATCTC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTC
EST: gi|100438313|gb|BY979894.1|BY979894
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|208372885|gb|DC956286.1|DC956286
EST:     GTTTCCGGACTTTGAAANTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|208369953|gb|DC931516.1|DC931516
EST:     GGCTCTCTATGATATTTGTTTCCGGACTT-GAA-TTGATCACTCCTNCGT                         NCGGGGAC-TGA-TCACNTGATCTC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTC
EST: gi|100358839|gb|BY946714.1|BY946714
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGG                         TCGGGGACCTGAATCACCTGAT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGAT
EST: gi|100400607|gb|BY954558.1|BY954558
EST:     GCTCTCTATGATATTTGTTTCCGGACTTTGGAAAT-GATCACTCCCTCGT                         TCGGTGAACTGAATCACCTGATCTCCGCG
genomic: GCTCTCTATGATATTTGTTTCCGGACTTTG-AAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCG
EST: gi|100405921|gb|BY991450.1|BY991450
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|162271673|gb|FC448598.1|FC448598
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100378119|gb|BY949690.1|BY949690
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAAATGATCACTCCTTCGT                         TCGGTGACCTGAATCAC-TGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100412852|gb|BY992468.1|BY992468
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100410705|gb|BY992227.1|BY992227
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|100378227|gb|BY949744.1|BY949744
EST:     GGCTCTCTATGATATTTGGTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGC
EST: gi|162208816|gb|FC384952.1|FC384952
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCT
EST: gi|208377493|gb|DC902788.1|DC902788
EST:     GGCTCTCTATGANATTNGTTTCCGGACTTTGAA-TTGATCACTCCTTCGT                         NCGGNGACNTGAATCA
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCA
EST: gi|100356188|gb|BY946239.1|BY946239
EST:     GCTCTCTATGATATTTGTTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTTGA-TCACCTGATCTCCGCGACGAAGAGCCGG-ATTACCTG
genomic: GCTCTCTATGATATTTGTTT-CCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCT-GAATCACCTGATCTCCGCGACGATGAGC-GGTATTACTTG
EST: gi|100404977|gb|BY991376.1|BY991376
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGACGATGA
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGA
EST: gi|100417931|gb|BY993255.1|BY993255
EST:     GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGT                         TCGGTGACCTGAATCACCTGATCTCCGCGAC
genomic: GGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 37

GTTCATCAGTTGGTGGAGAACGCCGACGAGTGCATGGTGTTAGATAACGAGGCTCTCTATGATATTTGTTTCCGGACTTTGAAATTGATCACTCCTTCGTgtaagtggta ... atttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCTGTCTGCGTTTTCCCGGCCAGCTGAACTCTGACCTGCGGAAATTGGCGGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagactccccgtagcctttgtgtcctcacactcgtatgaaattttatttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCTGTCTGCGTTTTCCCGGCCAGCTGAACTCTGACCTGCGGAAATTGGCGGT
                      tcctcac  putative branch site (score: 37)
                                         ttttatttct  putative PPT
                                  tatgaaattttatttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggtattttctacatttgttcattgtaatgaatcaattccccattcatttatttttcactttctactccagtcctttattgatggtaatggctgtgttcggattagactccccgtagcctttgtgtcctcacactcgtatgaaattttatttctgcagTCGGTGACCTGAATCACCTGATCTCCGCGACGATGAGCGGTATTACTTGCTGTCTGCGTTTTCCCGGCCAGCTGAACTCTGACCTGCGGAAATTGGCGGT

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