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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA

Basic information

species Physcomitrella patens
transcript PP1S215_81V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 3'ss of exon 2
tacttctccctgaaca-gcgactcggatcctcttat-ttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
   || ||  || |||    |||    |    | || || ||| | || | ||||    | | |  || ||    |  ||||    ||  |    | ||||| || || || ||    || || ||| | || ||| | |||   || |||||||||||||||||||||||||| ||||| ||||||||||||||| | || 
aggttttctttgcacatagaacttctctagattgatattcttgaagaagtttggtctagtgtgt--gtttttaaatgttttttcctttgctggtatattcagGGCTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGATCCCAGACTGGTTTCTTAACAGACAAAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 2
tacttctccctgaacagcgac--tcggatcctct-tatttattgtaaaattgtggtt-cgattttttagtattgt--tctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
      ||    || ||      | | ||  | | || || |||| ||       || |  ||| |  | |||||  |||||| || ||||      | | ||||| || |||||| | || ||||| ||| | || ||| | |||   |||||||| |||||  | ||||||||||||||||| |||||| | |||||| |||||
--aggttcagcaaatagttgtgttagcatattgtataattcttgtgaatcccaaattgcactttctctggattgttgtctaatattggtctca----acttttcagGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCAAGACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAA

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 3'ss of exon 2
tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtg----gttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
   ||     |  |  |    | ||   ||  | | |||| | |   | ||     || || ||||| | |||  |  ||||||     |  ||||  ||| ||||| ||||| || || || || ||||| |||||| ||||||||||||| || || ||||| ||||| ||||| || || |||||||| ||||| ||||||
-gtttggtagtagatgg-attttggtctctactttctattcttattctttgttatatttgaatttttggcattactaaaattttctaaatggttta--ctttagAGCTGGTGAACTATCTGCTGCTGAGCTCGAGAACCTGATGGTGATTGTGGCGAATCCTCGTCAGTTTAAGATCCCTGACTGGTTTCTGAACAGGAAGAAA

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
------------------------------------------------------------------------------------------tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
                                                                                          |   |||  | ||        | |       | ||| |||  ||||      |  |  |  |||  ||| ||||   |||  |  ||||  ||    ||| || ||||||||| | || || ||||| |||||| | |||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| ||||| 
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctg--tgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ25542 (Selaginella moellendorffii), 3'ss of exon 2
--tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
  |   |||  | ||        | |       | ||| |||  ||||      |  |  |  |||  ||| ||||   |||  |  ||||  ||    ||| || ||||||||  | || || ||||| |||||| | |||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| ||||| 
ccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctg--tgcttatcatttttctttgtttctttctcttcgatcgaacagGGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162253990|gb|FC430221.1|FC430221
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18330539|gb|BJ162545.1|BJ162545
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67508620|gb|BJ941482.1|BJ941482
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162212757|gb|FC388557.1|FC388557
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162210620|gb|FC386308.1|FC386308
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162234042|gb|FC410724.1|FC410724
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162243512|gb|FC420632.1|FC420632
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162208358|gb|FC384670.1|FC384670
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19790570|gb|BQ041941.1|BQ041941
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGATCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67691839|gb|BJ952072.1|BJ952072
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162206565|gb|FC382934.1|FC382934
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18336509|gb|BJ168531.1|BJ168531
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19788983|gb|BQ041032.1|BQ041032
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162261494|gb|FC438330.1|FC438330
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19785303|gb|BQ040298.1|BQ040298
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162201991|gb|FC377197.1|FC377197
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18328864|gb|BJ160870.1|BJ160870
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|37824978|gb|BJ583044.1|BJ583044
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18335100|gb|BJ167118.1|BJ167118
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|37844488|gb|BJ602496.1|BJ602496
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162263767|gb|FC439647.1|FC439647
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67718206|gb|BJ968465.1|BJ968465
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18341523|gb|BJ173558.1|BJ173558
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19782112|gb|BQ039812.1|BQ039812
EST:     GCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: GCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18350522|gb|BJ182573.1|BJ182573
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18345865|gb|BJ177908.1|BJ177908
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18375221|gb|BJ206799.1|BJ206799
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162206564|gb|FC382933.1|FC382933
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67691546|gb|BJ951779.1|BJ951779
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162263346|gb|FC438595.1|FC438595
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18328270|gb|BJ160274.1|BJ160274
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162271890|gb|FC448100.1|FC448100
EST:     TGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: TGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|15327335|gb|BI487947.1|BI487947
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162263768|gb|FC439648.1|FC439648
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67726692|gb|BJ976951.1|BJ976951
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19790285|gb|BQ041800.1|BQ041800
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18337077|gb|BJ169101.1|BJ169101
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162248121|gb|FC420841.1|FC420841
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162261495|gb|FC438331.1|FC438331
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162210621|gb|FC386309.1|FC386309
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18373983|gb|BJ205561.1|BJ205561
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162262456|gb|FC439499.1|FC439499
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|7147616|gb|AW509538.1|AW509538
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19789538|gb|BQ041366.1|BQ041366
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|18331563|gb|BJ163574.1|BJ163574
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162244240|gb|FC419839.1|FC419839
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162206592|gb|FC382350.1|FC382350
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|208387492|gb|DC933355.1|DC933355
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162264394|gb|FC440560.1|FC440560
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162248122|gb|FC420842.1|FC420842
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|37849277|gb|BJ607285.1|BJ607285
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|19790144|gb|BQ041716.1|BQ041716
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|67508331|gb|BJ941199.1|BJ941199
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162199889|gb|FC376455.1|FC376455
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|208368935|gb|DC947493.1|DC947493
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162230772|gb|FC406403.1|FC406403
EST:     CCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|37829844|gb|BJ587856.1|BJ587856
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
EST: gi|162201992|gb|FC377198.1|FC377198
EST:     CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGACGTCGATATGAGCAAGAG                         AGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC
genomic: CGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 199

GACGCCAGAAGATCATGTTTGCCTTGACCTCCATTAAGGGAGTTGGTCGTCGTTTCGCCAACTTAGTGTGCAAGAAGGCCGATGTCGATATGAGCAAGAGgtgagtgagt ... tattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA
                         ttctaat  putative branch site (score: 199)
                               ttttagtcttctttta  CT-rich tract
           attttttagtattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -ctgaaca