1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcgtgccattcagctccttgcgcaagtctcatccgatttcgtgcaatccttgtcctaagtgtcgcattttgctatctgggagaaaaagcacaggtagcgatactgagttgtattgatgttggatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCACTCATAGTTGCGAAGTG
species | Physcomitrella patens |
transcript | PP1S215_25V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGGTGCTACCGAAGAAATCGCCAEST: gi|18356615|gb|BJ188674.1|BJ188674
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|208345629|gb|DC909299.1|DC909299
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|162259779|gb|FC436759.1|FC436759
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|18343486|gb|BJ175524.1|BJ175524
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|18357148|gb|BJ189207.1|BJ189207
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|208371667|gb|DC932496.1|DC932496
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|162259765|gb|FC436758.1|FC436758
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|162221749|gb|FC397081.1|FC397081
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|67578005|gb|BJ950172.1|BJ950172
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|208365150|gb|DC946779.1|DC946779
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGGTGCTACCGAAGAAATCGCCAEST: gi|22492644|gb|BU052567.1|BU052567
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|67570549|gb|BJ943373.1|BJ943373
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|208354986|gb|DC914250.1|DC914250
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|208382460|gb|DC927994.1|DC927994
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|18350245|gb|BJ182296.1|BJ182296
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGACGCTACCGAAGAAATCGCCAEST: gi|67693833|gb|BJ954066.1|BJ954066
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: GTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCAEST: gi|18332428|gb|BJ164441.1|BJ164441
genomic: GTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
EST: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAG TATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
genomic: AAGTGAAGGCCTCGGTGCAGAGGAAAATCCGGCAAAACATCGCCGATGAGgtgcgtgcca ... gatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCA
tgggagaaaaagcacaggtagcgatactgagttgtattgatgttggatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCACTCATAGTTGCGAAGTG
tattgat putative branch site (score: 12)
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgccattcagctccttgcgcaagtctcatccgatttcgtgcaatccttgtcctaagtgtcgcattttgctatctgggagaaaaagcacaggtagcgatactgagttgtattgatgttggatggaatagTATCCTGATTTGGAGCCTCTGTTGGACGAGATGCTACCGAAGAAATCGCCACTCATAGTTGCGAAGTG
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