1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atctcaaatttgtctgtctcgttcttttcacaacgtacaatataggtggtgcgtgtgtcgatgacgttgctcagggtgtttgtttggataatgtggttagCTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCCATCGCCAACAGTTCCATTGGGGAGCAACTCCAGCAACGTATGCTGAAGA
species | Physcomitrella patens |
transcript | PP1S215_109V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAACTCGTCGAAATGGACAGCTTCCTCGATGCAGAGCAGCTTGGCAGGAG CTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCCEST: gi|162276352|gb|FC452433.1|FC452433
genomic: TAACTCGTCGAAATGGACAGCTTCCTCGATGCAGAGCAGCTTGGCAGGAGgtacgttggt ... atgtggttagCTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCC
EST: TAACTCGTCGAAATGGACAGCTTCCTCGATGCAGAGCAGCTTGGCAGGAG CTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCC
genomic: TAACTCGTCGAAATGGACAGCTTCCTCGATGCAGAGCAGCTTGGCAGGAGgtacgttggt ... atgtggttagCTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCC
gtggtgcgtgtgtcgatgacgttgctcagggtgtttgtttggataatgtggttagCTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCCATCGCCAACAGTTCCATTGGGGAGCAACTCCAGCAACGTATGCTGAAGA
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcaaatttgtctgtctcgttcttttcacaacgtacaatataggtggtgcgtgtgtcgatgacgttgctcagggtgtttgtttggataatgtggttagCTAGCAGGAGTAGTAGTCTTCTCTGCGCTCCCATTCACCTTAGTTAAAGCCATCGCCAACAGTTCCATTGGGGAGCAACTCCAGCAACGTATGCTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA