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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgccgcttttttagtgcagaaacgttaaaattcatcttggagctctcaattgtattagcaaatgttgattagagaccaattttcttctctgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA

Basic information

species Physcomitrella patens
transcript PP1S213_68V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os03g63400.1 (Oryza sativa), 3'ss of exon 3
ctgccgcttttttagtgcagaaacgttaaaattcatcttggagctctcaattgtattagcaaatgtt-gattagagaccaattttcttctctgttt-tgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA
  |        |   | | |    |   |   | | | ||||  |  ||| ||  |       |||| |||||   | | || |||    |    | ||||||||||||||| |||||||| ||||| ||||| || |||||  |  ||  ||| ||||
--gtataagcatccctcctgttttgcctaccgt-accatggaaatgccaactgcttc--ttggtgttagattacttatccatgttcgatccgacctgtgcagTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGA

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA01G18780.1 (Glycine max), 3'ss of exon 2
ctgccgcttttttagt--gcagaaacgttaaaattcatcttggagctctcaattgtattagcaaatgttgattagagaccaattttcttctctgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA
     |   | ||| |  |    ||  |||  || ||  ||     | ||||   | | ||   |   |  ||    |  || |    |||    |||||||| ||||| ||||| || |||||||||||||| ||||||||  || ||   || ||||
-----gtaatattaattggtgataattttagtatacaattta----tttcaacattttaagttgactctatttgttca--aaatggaatct----tttgcagTACAAGCATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAACAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348717|gb|DC926392.1|DC926392
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67709655|gb|BJ965471.1|BJ965471
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162248112|gb|FC419701.1|FC419701
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162261267|gb|FC437284.1|FC437284
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162245442|gb|FC421344.1|FC421344
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162201863|gb|FC377797.1|FC377797
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162201226|gb|FC378461.1|FC378461
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67722793|gb|BJ973052.1|BJ973052
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|37850633|gb|BJ608641.1|BJ608641
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67710220|gb|BJ965894.1|BJ965894
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|37836700|gb|BJ594708.1|BJ594708
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|18369319|gb|BJ201405.1|BJ201405
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162209748|gb|FC385682.1|FC385682
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162201862|gb|FC377796.1|FC377796
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCATTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162279241|gb|FC455788.1|FC455788
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67723731|gb|BJ973990.1|BJ973990
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67704278|gb|BJ964511.1|BJ964511
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCC
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCC
EST: gi|162279606|gb|FC455358.1|FC455358
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162279240|gb|FC455787.1|FC455787
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|37839915|gb|BJ597923.1|BJ597923
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|18362681|gb|BJ194752.1|BJ194752
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162201020|gb|FC378151.1|FC378151
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162248113|gb|FC419702.1|FC419702
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|100449281|gb|CJ973580.1|CJ973580
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162274339|gb|FC450307.1|FC450307
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|37844027|gb|BJ602035.1|BJ602035
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162262878|gb|FC438764.1|FC438764
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|18357333|gb|BJ189392.1|BJ189392
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67724158|gb|BJ974417.1|BJ974417
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|19789623|gb|BQ041415.1|BQ041415
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162205674|gb|FC381889.1|FC381889
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|67724455|gb|BJ974714.1|BJ974714
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|208344777|gb|DC912611.1|DC912611
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162271998|gb|FC448416.1|FC448416
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162279605|gb|FC455357.1|FC455357
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|162205675|gb|FC381890.1|FC381890
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|18358769|gb|BJ190828.1|BJ190828
EST:     GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
EST: gi|6227472|gb|AW156071.1|AW156071
EST:     GTGTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGG                         TGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA
genomic: GT-TAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 65

CAAAACACTCTGAAGAGACTTGGTGTAAATACTATTCCTGGCATTGAGGAGGTTAACATCTTCAAGGACGAAACTGTTATCCACTTCGTCAACCCCAAGGgtattgcact ... tgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaattgtattagcaaatgttgattagagaccaattttcttctctgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA
                  tgttgat  putative branch site (score: 65)
                                   ttttcttctctgtttt  putative PPT
                                 aattttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgccgcttttttagtgcagaaacgttaaaattcatcttggagctctcaattgtattagcaaatgttgattagagaccaattttcttctctgttttgcagTGCAAGCTTCTATCGCCGCCAACACTTGGGTCGTTAGTGGACCATCATCGACTAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA